Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01543 ATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCGTCGCTCCAGCCGGAACGGCAAGGCTCGACAGCGGTTGCCGAGGAGTTGGATGATTCGATCGCGATTGATCCTGGTATTAAGCTGATGTACCTGTCGAATGATGGCGACTCGGATGGGATTAGAGAGCTGCTGGATTCTGGTGCCGACGTGAATTTTCGCGACATTGACGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCAGGCCGGAGATTGTTGAGATACTACTCGAAAGAGGAGCGGAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCAGGACGTGATCAAGCTCTTAGAGAAACATGGTGCTAGGCTACCGATGGCTCCAATGCTTGTGCAAAATGCTCTTGAAGTTCCGGAATATGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCTGCATTGCATCATGGCGGGGAATTGAAGTTGCTGTGAAGACACTAGGAGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTCAGGGATGAACTTGCTTTACTTCAAAAGATACGGCATCCTAACGTTGTCCAATTTTTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCATGGAGTATTTGCCACAGGGAGACCTTCATGCATACTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTTGTTAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTACATGAGCATAAACCTGAAGCAATAATTCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTATGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTGAAATTGTCAAATAGGGTCAAAGAAGACAGACCTGTGGCTGTGGCATGTCACGATACTTCATGGCGATATGTGGCGCCTGAGGCTTATAAAGATGAAGAATACGATACGAAAGTGGATGTATTTTCATTTGCCTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTATGGCTCCAACTAAGCGTTATGCAGATGGAGTGAAGGAGCTAATCGAGGAATGTTGGGAAGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATCAACAATGAAATTATGCACACAAGGAGCTTGAAGATGAATCATTTCTGCAATTGCTTCGGGAACCTGACAGCCTTGTTTAAAAGGGAAAGGACTAGTCCAGGCAGCAGATCTTTCTCGAAAAGCAAATGA 1383 44.61 MDSNVRARFTLGKQSSLQPERQGSTAVAEELDDSIAIDPGIKLMYLSNDGDSDGIRELLDSGADVNFRDIDGRTSLHVAACQGRPEIVEILLERGAEVDVQDRWGSTPLADAIYYKNQDVIKLLEKHGARLPMAPMLVQNALEVPEYEINPNELDFSKSVNITKGTFCIASWRGIEVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVMEYLPQGDLHAYLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSMHLKVADFGVSKLLKLSNRVKEDRPVAVACHDTSWRYVAPEAYKDEEYDTKVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMAPTKRYADGVKELIEECWEEKPHKRPTFRQIIRRLEDINNEIMHTRSLKMNHFCNCFGNLTALFKRERTSPGSRSFSKSK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10606822 10613608 + Cp4.1LG05g15390.1 Cpe05g01543 470748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01543 460 PIRSF ILK 2 437 - -
Cpe05g01543 460 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 9 441 - -
Cpe05g01543 460 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cpe05g01543 460 SMART ANK_2a 22 67 IPR002110 GO:0005515
Cpe05g01543 460 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cpe05g01543 460 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cpe05g01543 460 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 441 - -
Cpe05g01543 460 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515
Cpe05g01543 460 CDD STKc_MAP3K-like 162 415 - -
Cpe05g01543 460 MobiDBLite consensus disorder prediction 1 25 - -
Cpe05g01543 460 Gene3D - 7 142 IPR036770 -
Cpe05g01543 460 SUPERFAMILY Protein kinase-like (PK-like) 163 416 IPR011009 -
Cpe05g01543 460 Gene3D Transferase(Phosphotransferase) domain 1 143 437 - -
Cpe05g01543 460 Pfam Protein tyrosine and serine/threonine kinase 171 415 IPR001245 GO:0004672|GO:0006468
Cpe05g01543 460 ProSiteProfiles Protein kinase domain profile. 121 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01543 460 MobiDBLite consensus disorder prediction 1 23 - -
Cpe05g01543 460 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cpe05g01543 460 SUPERFAMILY Ankyrin repeat 22 132 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00403 Cpe-Chr4:4678275 Cpe05g01543 Cpe-Chr5:10606822 3.53E-110 dispersed
Cpe05g01543 Cpe-Chr5:10606822 Cpe10g00123 Cpe-Chr10:793322 0 dispersed
Cpe16g00854 Cpe-Chr16:8137533 Cpe05g01543 Cpe-Chr5:10606822 1.97E-16 dispersed
Cpe16g00735 Cpe-Chr16:7431807 Cpe05g01543 Cpe-Chr5:10606822 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62450 PF07714 PK_Tyr_Ser-Thr 1.00E-57 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01543 - - cpep:111777411 797.349