Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g01559 | ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCCGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTTCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAACAAATCGATCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGTGTCGCCGTCTGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG | 501 | 54.29 | MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETVSPSGKINIPPQNKSYFSMDNMGESLWSSC | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10711597 | 10713035 | - | Cp4.1LG05g15670.1 | Cpe05g01559 | 470764 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g01559 | 166 | Coils | Coil | 92 | 112 | - | - | |
Cpe05g01559 | 166 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Cpe05g01559 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
Cpe05g01559 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 1 | 156 | - | - | |
Cpe05g01559 | 166 | MobiDBLite | consensus disorder prediction | 120 | 152 | - | - | |
Cpe05g01559 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00996 | Cpe-Chr1:5909954 | Cpe05g01559 | Cpe-Chr5:10711597 | 1.17E-52 | dispersed | |
Cpe01g01020 | Cpe-Chr1:6038761 | Cpe05g01559 | Cpe-Chr5:10711597 | 1.16E-58 | dispersed | |
Cpe05g00986 | Cpe-Chr5:6418129 | Cpe05g01559 | Cpe-Chr5:10711597 | 1.62E-56 | dispersed | |
Cpe05g01423 | Cpe-Chr5:9959714 | Cpe05g01559 | Cpe-Chr5:10711597 | 5.57E-24 | dispersed | |
Cpe05g01559 | Cpe-Chr5:10711597 | Cpe20g00593 | Cpe-Chr20:3637867 | 1.17E-66 | dispersed | |
Cpe14g00127 | Cpe-Chr14:687641 | Cpe05g01559 | Cpe-Chr5:10711597 | 8.90E-39 | dispersed | |
Cpe15g00887 | Cpe-Chr15:8564234 | Cpe05g01559 | Cpe-Chr5:10711597 | 2.04E-20 | dispersed | |
Cpe18g00859 | Cpe-Chr18:7908787 | Cpe05g01559 | Cpe-Chr5:10711597 | 6.36E-48 | dispersed | |
Cpe20g00259 | Cpe-Chr20:1458285 | Cpe05g01559 | Cpe-Chr5:10711597 | 1.68E-46 | dispersed | |
Cpe05g01559 | Cpe-Chr5:10711597 | Cpe04g00856 | Cpe-Chr4:7887266 | 8.27E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49616 | PF03195 | LOB | 6.90E-44 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g01559 | - | - | csv:101220394 | 290.812 |