Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01559 ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCCGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTTCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAACAAATCGATCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGTGTCGCCGTCTGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG 501 54.29 MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETVSPSGKINIPPQNKSYFSMDNMGESLWSSC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10711597 10713035 - Cp4.1LG05g15670.1 Cpe05g01559 470764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01559 166 Coils Coil 92 112 - -
Cpe05g01559 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cpe05g01559 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cpe05g01559 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 156 - -
Cpe05g01559 166 MobiDBLite consensus disorder prediction 120 152 - -
Cpe05g01559 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00996 Cpe-Chr1:5909954 Cpe05g01559 Cpe-Chr5:10711597 1.17E-52 dispersed
Cpe01g01020 Cpe-Chr1:6038761 Cpe05g01559 Cpe-Chr5:10711597 1.16E-58 dispersed
Cpe05g00986 Cpe-Chr5:6418129 Cpe05g01559 Cpe-Chr5:10711597 1.62E-56 dispersed
Cpe05g01423 Cpe-Chr5:9959714 Cpe05g01559 Cpe-Chr5:10711597 5.57E-24 dispersed
Cpe05g01559 Cpe-Chr5:10711597 Cpe20g00593 Cpe-Chr20:3637867 1.17E-66 dispersed
Cpe14g00127 Cpe-Chr14:687641 Cpe05g01559 Cpe-Chr5:10711597 8.90E-39 dispersed
Cpe15g00887 Cpe-Chr15:8564234 Cpe05g01559 Cpe-Chr5:10711597 2.04E-20 dispersed
Cpe18g00859 Cpe-Chr18:7908787 Cpe05g01559 Cpe-Chr5:10711597 6.36E-48 dispersed
Cpe20g00259 Cpe-Chr20:1458285 Cpe05g01559 Cpe-Chr5:10711597 1.68E-46 dispersed
Cpe05g01559 Cpe-Chr5:10711597 Cpe04g00856 Cpe-Chr4:7887266 8.27E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49616 PF03195 LOB 6.90E-44 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01559 - - csv:101220394 290.812