Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00008 ATGCGTCCCTTTAGGTACCTCGCCGGTGTGAACTCCTCCGCCATCTCCGACTCGGCTGAGCCCCAGACATATGACTCTGACTTCGTCATAATCCTAGCTGCCCTCCTCTGTGCCTTGATATGCGTTCTCGGTCTCGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCACCTTGCCGGCAATGTCAGCGGCGGCGCCTCCACTCGTCCTCCTCCTCCTCCTGCGTCCAATAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACAACTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCAGTCGGTGATGAAATCCGGGTGCTGCCGCAGTGCGGCCATGGATTTCACGTGTCCTGCATCGATATGTGGTTCCGATCTCACTCTTCATGTCCTTCGTGCCGTCAGATTCTTGTGGTAAGTCAGTGCCAGAAGTGCGGTGGTTTTCCGGCGAGCTCGAGTTCGAACGGTGGGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAGTAGATTCTTACCTTAG 561 55.61 MRPFRYLAGVNSSAISDSAEPQTYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGNVSGGASTRPPPPPASNKGLKKKILRSLPKYNFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDMWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTSRFLP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29388 29948 - Cp4.1LG06g00100.1 Cpe06g00008 470788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00008 186 PANTHER RING-H2 FINGER PROTEIN ATL8 2 179 - -
Cpe06g00008 186 Pfam Ring finger domain 102 145 IPR001841 -
Cpe06g00008 186 MobiDBLite consensus disorder prediction 160 186 - -
Cpe06g00008 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cpe06g00008 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 179 - -
Cpe06g00008 186 SMART ring_2 103 144 IPR001841 -
Cpe06g00008 186 SUPERFAMILY RING/U-box 86 151 - -
Cpe06g00008 186 CDD RING-H2_EL5_like 102 145 - -
Cpe06g00008 186 MobiDBLite consensus disorder prediction 171 186 - -
Cpe06g00008 186 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00008 Cpe-Chr6:29388 Cpe08g01279 Cpe-Chr8:9244373 2.59E-61 dispersed
Cpe10g00665 Cpe-Chr10:3839902 Cpe06g00008 Cpe-Chr6:29388 4.65E-15 dispersed
Cpe02g00022 Cpe-Chr2:122794 Cpe06g00008 Cpe-Chr6:29388 7.69E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00008 - - csv:101207021 339.732