Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00011 ATGAGTTTCTTTTTGCTTCTTTCTTTGCTATCTCTCTGTTGTGGTAGTTTTTCTCTCGAATTTGGTAAGAACAGTTCGTCAAGACCTTCGGTTGTGAACATTGGGGCTATTTTCTCTTTTGATTCCACCATTGGAAAAGTTGCTAAAATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCTCGGAATTCTTCCAGGAACCAAGCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTACAACTTATGGAGAATAAAACCGTAGCCATCATAGGCCCTCAGTCTTCTGTGGTTGCTCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTGGTCTCATTTTCAGCTACAGATCCTACTCTCTCTGCCCTTCAGTTTCCATTCTTCGTGAGGGCTGCGCAGAGTGATTTATTTCAAATGGCTGCAGTTGCTGAGATTGTTGATTATTATGGTTGGAAAGAGGTGATTGCTATATATGTGGATGATGATTATGGGTGGAACGGTATTGCAACATTGGGTGATAAACTTGCTGAGAAGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGAATCAGTGGTGACTCGAGCCCAAGTTTTGGATCAACTTGTTAAGGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCGCCTTAGTCTTTTCAGTGGCTAAATTCCTTCAAATGATGGGGAATGGATATGTATGGATAACAACTGATTGGCTTTCTTCTCTACTAGATAGTGTTGTTCCTCTCCCTCTTGAGACCGTAGAGTCGATGCAAGGAGTTCTTTCTCTACGCCAGCACACAGCGGATTCAGATCAAAAGAAAGCTTTTCTTTCAAGGTGGAATAAGTTCACCGGTGGCTCTTTAGGTCTGAATGCATATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCCACAAATTTCTTAATCAAGGTGGGATCATCGCACATTCTGATGATTCCAGACTGCATCTAAATGAAAGCGGTAATCTTCATCTTGAAGCTATGACTATCTTTGATGGCGGAAAACGCCTGCTGGATAACATATTGGAGAGTGACTTTGTTGGTTTGAGCGGTGCCATTAAATTTGATTCTGACAGATCCCTTCCTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGAGTGGGTTACTGGTCCAACTATTCTGGTCTATCAGTTGATTCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCAAGCGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAATAGGTAAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTATTAAACATTGGAGTGCCACTTCGGGTCAGCTACAAGGAGTTTGTATCACAAATCAAAAGGACTGAAAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAGCTTATTACCCTACGCTGTCCCGCACCGATTCATAGCCTTTGGCGATGGCCATCATAATCCAAATTACACAGATCTTGTGTATGGGATCACAACTGGCAAATTTGATGCTGTTGTTGGGGACATTGCCATTGTCACGAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTGGTGGCTCCATTCCAAAAACTGAACACTGGTGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACCGCTAGTTTCTTCCTTTTTATCGGAATTGTTATCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGTCCACCTAAAAAACAATGTATTACAATTCTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCACAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGTTCTTTGTGGTTTTGATAATAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACGGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGACGAAAGGTGGCGAACCGATAGGCTTTCAAGTTGGATCGTTCGCTGAACGTTATCTGAGTGAGGAGCTGAACATATCTAAATCCAGGCTTTTTGCTCTTGGATCACCGGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGGGGGTGTTGCTGCTATAGTTGACGAACGTCCATATGTAGAAAGTTTCCTGTCGAGACAGTGCACATTCAGAGTTGTTGGTCAAGAGTTTACAAAAAGTGGCTGGGGTTTCGCATTCCCCAGAGATTCTCCCTTGGCTGTAGACTTGTCGACGGCCATTTTGCAGCTCTCGGAGAATGGCGATCTTCAACGGATTCATGATAAATGGCTAATGAAAAGCGCCTGCAGCATGGACAGTGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTGTTTCTAATATGTGGGATAGTCTGTTTCATTTCTCTTGCCATATACTGCTTTCAGATTATTCGTCAGCTATACCGTTCTGATGAGAAAGGATCTGATCTGTCCATCAGTAGTGGATCACATTCTAATCGTCTTCGACGAATTATATCATTGATGGATGAGAAAAAAGAACCTTCTAAAAGAGAAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGATAGGGATGATGATCAGTTGGAGATCAATCCCTGA 2754 42.77 MSFFLLLSLLSLCCGSFSLEFGKNSSSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADLGILPGTKLWLQMQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMAAVAEIVDYYGWKEVIAIYVDDDYGWNGIATLGDKLAEKRCKITYKVGISPESVVTRAQVLDQLVKVALMESRVMVLHVNPKLGALVFSVAKFLQMMGNGYVWITTDWLSSLLDSVVPLPLETVESMQGVLSLRQHTADSDQKKAFLSRWNKFTGGSLGLNAYGLYAYDSVWVVAHAIHKFLNQGGIIAHSDDSRLHLNESGNLHLEAMTIFDGGKRLLDNILESDFVGLSGAIKFDSDRSLPHPAYDIINVIGTGSRRVGYWSNYSGLSVDSPETLYSKPPNRSSANQKLYEVIWPGNTIGKPRGWVFPNNGKLLNIGVPLRVSYKEFVSQIKRTENFQGFCIDVFTAAVSLLPYAVPHRFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFQKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVIWILEHRTNDEFRGPPKKQCITILWFSFSTLFFAHKENTISTLGRLVLIIWFFVVLIINSSYTASLTSILTVQQLYSPITGIETLTKGGEPIGFQVGSFAERYLSEELNISKSRLFALGSPEEYAKALELGPDKGGVAAIVDERPYVESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAVDLSTAILQLSENGDLQRIHDKWLMKSACSMDSAELESDRLQLKSFWGLFLICGIVCFISLAIYCFQIIRQLYRSDEKGSDLSISSGSHSNRLRRIISLMDEKKEPSKRESKRRKVEKSSENDRDDDQLEINP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38883 44199 - Cp4.1LG06g00140.1 Cpe06g00011 470791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00011 917 CDD GluR_Plant 466 808 - -
Cpe06g00011 917 SUPERFAMILY Periplasmic binding protein-like I 26 460 IPR028082 -
Cpe06g00011 917 PANTHER GLUTAMATE RECEPTOR 3.3 13 915 - -
Cpe06g00011 917 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Cpe06g00011 917 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Cpe06g00011 917 Gene3D - 774 807 - -
Cpe06g00011 917 Pfam Bacterial extracellular solute-binding proteins, family 3 490 808 IPR001638 -
Cpe06g00011 917 MobiDBLite consensus disorder prediction 882 917 - -
Cpe06g00011 917 Gene3D - 463 578 - -
Cpe06g00011 917 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Cpe06g00011 917 PIRSF IGluLR_plant 1 916 IPR017103 -
Cpe06g00011 917 Gene3D - 738 773 - -
Cpe06g00011 917 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Cpe06g00011 917 Gene3D - 147 421 - -
Cpe06g00011 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 915 - -
Cpe06g00011 917 Gene3D - 50 396 - -
Cpe06g00011 917 Gene3D - 579 711 - -
Cpe06g00011 917 CDD PBP1_GABAb_receptor_plant 33 423 IPR044440 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00025 Cpe06g00011 CCT
Cpe02g00025 Cpe06g00011 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00635 Cpe-Chr4:6560466 Cpe06g00011 Cpe-Chr6:38883 0 dispersed
Cpe06g00011 Cpe-Chr6:38883 Cpe10g00717 Cpe-Chr10:4100639 0 dispersed
Cpe02g00025 Cpe-Chr2:134377 Cpe06g00011 Cpe-Chr6:38883 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00011 K05387 - csv:101204862 1582.77