Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00012 ATGGCCACGGGTTTAGATTTTTCACCTCCCTTCACCCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGACCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGGCATAGTGTGAGCTCCATAAAGCTCCTTGGTCAAGCTGACTTGAGCTTGGATGCAGAAACTCTTGGGAATAAGTCGCCTGATGGGAAAACAGGATTCTTACCTGTCTTGAGATCGGGTAGCTGTTCAGAAAAAGGACCTAAGCAGTACATGGAAGACGAACACATATGCATAGATGATCTTGTTGAACATATCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCGTTCTATGGTGTATTTGATGGCCATGGGGGTACAGATGCCGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATTGTGGAGGACTCCTGTTTTCCAATTAGTGTAGAGAAGGCAATTAAGAGTGCCTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACTACTGCCCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGTGCTGTTCTGGGTAGGAGGGGCAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCATCTGAAAAACTCAGAATTGAGAAGCTTGGTGGGGTGATATATGATGGCTATCTCAATGGCCAGTTATCTGTTGCGCGTGCTATAGGAGATTGGCACATGAAAGGTGCCAAGGGGTCTGCTAGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAATTGAATCTGACGGAGGAAGATGAATTTCTAATAATGGGGTGCGATGGGCTTTGGGATGTTATGAGCAGTCAGTATGCTATTACAATGGCAAGGAAAGAGCTAATGCTACACAACGATCCAGAAAGATGTTCAAGAGAGCTGGTAAGGGAGGCGCTAAAGCGCAATACGTGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCCACTGATCCGCCCCCTCGGATAGAAATACCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCATGA 1161 45.65 MATGLDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMTSGKPPRHLSVMRHSVSSIKLLGQADLSLDAETLGNKSPDGKTGFLPVLRSGSCSEKGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSASPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAITMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSTDPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44878 49043 + Cp4.1LG06g00020.1 Cpe06g00012 470792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00012 386 MobiDBLite consensus disorder prediction 18 49 - -
Cpe06g00012 386 Gene3D - 77 354 IPR036457 -
Cpe06g00012 386 SMART PP2C_4 81 349 IPR001932 -
Cpe06g00012 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Cpe06g00012 386 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 373 - -
Cpe06g00012 386 MobiDBLite consensus disorder prediction 29 44 - -
Cpe06g00012 386 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Cpe06g00012 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cpe06g00012 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cpe06g00012 386 CDD PP2Cc 91 351 IPR001932 -
Cpe06g00012 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00026 Cpe06g00012 CCT
Cpe02g00026 Cpe06g00012 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00012 Cpe-Chr6:44878 Cpe17g00726 Cpe-Chr17:5769558 4.37E-102 dispersed
Cpe04g01388 Cpe-Chr4:11226445 Cpe06g00012 Cpe-Chr6:44878 2.50E-35 transposed
Cpe02g00026 Cpe-Chr2:140957 Cpe06g00012 Cpe-Chr6:44878 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49620 PF00481 PP2C 2.20E-72 CL0238 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00012 K14803 - csv:101205355 757.288