Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00012 | ATGGCCACGGGTTTAGATTTTTCACCTCCCTTCACCCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGACCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGGCATAGTGTGAGCTCCATAAAGCTCCTTGGTCAAGCTGACTTGAGCTTGGATGCAGAAACTCTTGGGAATAAGTCGCCTGATGGGAAAACAGGATTCTTACCTGTCTTGAGATCGGGTAGCTGTTCAGAAAAAGGACCTAAGCAGTACATGGAAGACGAACACATATGCATAGATGATCTTGTTGAACATATCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCGTTCTATGGTGTATTTGATGGCCATGGGGGTACAGATGCCGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATTGTGGAGGACTCCTGTTTTCCAATTAGTGTAGAGAAGGCAATTAAGAGTGCCTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACTACTGCCCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGTGCTGTTCTGGGTAGGAGGGGCAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCATCTGAAAAACTCAGAATTGAGAAGCTTGGTGGGGTGATATATGATGGCTATCTCAATGGCCAGTTATCTGTTGCGCGTGCTATAGGAGATTGGCACATGAAAGGTGCCAAGGGGTCTGCTAGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAATTGAATCTGACGGAGGAAGATGAATTTCTAATAATGGGGTGCGATGGGCTTTGGGATGTTATGAGCAGTCAGTATGCTATTACAATGGCAAGGAAAGAGCTAATGCTACACAACGATCCAGAAAGATGTTCAAGAGAGCTGGTAAGGGAGGCGCTAAAGCGCAATACGTGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCCACTGATCCGCCCCCTCGGATAGAAATACCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCATGA | 1161 | 45.65 | MATGLDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMTSGKPPRHLSVMRHSVSSIKLLGQADLSLDAETLGNKSPDGKTGFLPVLRSGSCSEKGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSASPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAITMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSTDPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44878 | 49043 | + | Cp4.1LG06g00020.1 | Cpe06g00012 | 470792 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00012 | 386 | MobiDBLite | consensus disorder prediction | 18 | 49 | - | - | |
Cpe06g00012 | 386 | Gene3D | - | 77 | 354 | IPR036457 | - | |
Cpe06g00012 | 386 | SMART | PP2C_4 | 81 | 349 | IPR001932 | - | |
Cpe06g00012 | 386 | ProSitePatterns | PPM-type phosphatase domain signature. | 130 | 138 | IPR000222 | GO:0043169 | |
Cpe06g00012 | 386 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 1 | 373 | - | - | |
Cpe06g00012 | 386 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
Cpe06g00012 | 386 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 373 | IPR015655 | GO:0004722|GO:0006470 | |
Cpe06g00012 | 386 | Pfam | Protein phosphatase 2C | 92 | 343 | IPR001932 | - | |
Cpe06g00012 | 386 | ProSiteProfiles | PPM-type phosphatase domain profile. | 91 | 351 | IPR001932 | - | |
Cpe06g00012 | 386 | CDD | PP2Cc | 91 | 351 | IPR001932 | - | |
Cpe06g00012 | 386 | SUPERFAMILY | PP2C-like | 85 | 352 | IPR036457 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00026 | Cpe06g00012 | CCT | |
Cpe02g00026 | Cpe06g00012 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00012 | Cpe-Chr6:44878 | Cpe17g00726 | Cpe-Chr17:5769558 | 4.37E-102 | dispersed | |
Cpe04g01388 | Cpe-Chr4:11226445 | Cpe06g00012 | Cpe-Chr6:44878 | 2.50E-35 | transposed | |
Cpe02g00026 | Cpe-Chr2:140957 | Cpe06g00012 | Cpe-Chr6:44878 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49620 | PF00481 | PP2C | 2.20E-72 | CL0238 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00012 | K14803 | - | csv:101205355 | 757.288 |