Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00014 ATGGATCAGTTCGACGCTTTCTTTCGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTGGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACTGGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACACCTGAAATTGTCAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATCCCCCCACCAAAGATTGATCTTTCGGCTGTATCTGCCACTCAATCAATTTCAGTGACTGCTGCATCTCCTCCACAGATGAGTATGCCTGCGCCAACGGCACCTCAAAATTTTGGCTTTAGAGGACAAGGGGTTCCAAACGTGGGTGTGAATCCGCAGTATGTTTCAGCCCAGCCAAATCCTTCCATGAGGTTACCCCAAGGCACACCTGGTGGTGTTGCTTCCAACACGCAACTGGTTATTGCTGCTTCTGAATCCTCAGGAGGAGGAAATGTACTGGGTTCAAATCTTTCAAACCCAAATGGTTGGCTCACGCCAGGTGGTGGCCCTGCTGCTGGGCCTAGGGGAGTTAGCCCTTCTGTGCCTTCCCCAGCTACATCGTTATCACCAGCTTTAATGACTTCACAGCCTATGCCTAATAATACAGCACCAGCTGCTACTGGTAACGGATTTGCTTCTAAGTCGGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCTCCACCTAGACCAGAATCTTCTGGACTCAACAATGCAGCCAATAATGGTACTGGTCCACCAGCGATTGTTGCAGGTTCCAGTGTATCCCAGCCTTTAAGTAAGCACAACTCCATGGAGTCATTGCAGAGTGCATTTGTTTCAAGACCAATATCTGATTCACAGTTGCAGCTCTCTCAGACATCATTGGAACCTAGCAAGGAGGTTCGAGCAACCAGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCTACTTCTGAAAACACACAGCTTACTTGGCCAAAAATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGATGGTAGAATTACCGGTGAGCAGGCACGGAATCTATTTTTAAGTTGGAGATTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTTAGAGAGTTTTGTTTTGCTTTATATCTCATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGTGCTTCCAAATAATCTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAATCTAACATTGTCCATCCGAATGCAGCTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCAACCTCAGGTCACTGCTCGGTCAATGGCACCAACTGTAGGATTGAGGCCCCCAACAAATGTACTTGCTTCGAAGGTTGATGGTGCTAAACTATCCAATGAGCAGAAATCAAGGGCTTCAGTGTTGCAGGATTCATTTCTGGTCGATTCTGAGAAGGGCCAACAAAATTCGGCTAGTTTAAATGCTCAAGATGCTACAGCAGCATCTGGGAAAATGGTTGGAGAGACAGCGAATGTTATTTTGGACTCAAAAGAAAAGATTAAATTCTATCGCACGATGATGCAGGAAATTGAAAGGAAGACAGAGTTGCATCAAGCAATTATTAATATAGAACAAGGAGGAAGTGCTGATGGTATCCTCCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAATCGGCTGCTATAATCGAGCTTCCAGTAGGTTGGCAACCTGGAATTCCGGATGATGCAGCTATTTGGGATGAAGAATGGGATAAATTTGAAGATGAAGGATTTTCCAATGATCTTAACTTCGATACAAAAGGTGTTTCTGCCTCAAAACCAAAAATGTCAGAAAGTCAGGGAGAAAAGGGTCTAGCAGATTATAATTCGACTCCTGATTCATCGTCAAATGCCAATGAGAAAACAGGGAACTCCTTGAGTACCATCAATCATGGCCTTGAGAGTGATTCTGTGTATAGTCACAGTGAAGATGAATTAGCTAAAAGTCCATATGGCAGTCCTGCTGCAAAGACATCTCTCGAAAGCCCTTCTCATGAATTTTCAGATGCAGGTTATGAAAAGAGTCCGGAAGCATATAGAAGTTTTAATGAGTCCGCTTGGGGCGCATTTGACAATAATGATGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCTGAAAAGCACAGAGATTTCTTTGGAAACAGTGATTTTGATACTAGCTCCGTCAAAACAGGATCCCCGAATGCAGATAGCTTCTTTCAGAGAAAAAGCCCATTTTTTGATGATTCTGTCCCTCCCACTCCCCTCTCTAGATTCGGCAACTCTTCCCCTCGTTACAGCGATGTGGGGGATCACTTCTTTGACCATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATGGCAGCTTTTCTCCGCAACGTGAGAAGTTCACGAGGTTCGATTCAATAAGCAGTTCTCGAGATTTTGGCCACAATCAAGAGAAGTTCTCAAGGTTTGATTCTATGAGTAGTAGCATGGACTTCGGCCAGAGTAACCAGAGGCACGCCAGGTTTGACTCCATTGACAGCTCCAGAGATTTTGGCCACGGCCATGGCGCCTTCTCTTTTGATGATACAGATCCATTTGGTACCTCTGGCCCGTTTAAAGTCTCATCAGAGAGTCAAAGTCCGAAGAAAAGCTCCGACAATTGGAGAGCTTTTTAA 2904 44.83 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLPKNVLAQIWMHADQRKTGFLGRLEFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLSAVSATQSISVTAASPPQMSMPAPTAPQNFGFRGQGVPNVGVNPQYVSAQPNPSMRLPQGTPGGVASNTQLVIAASESSGGGNVLGSNLSNPNGWLTPGGGPAAGPRGVSPSVPSPATSLSPALMTSQPMPNNTAPAATGNGFASKSAFGADMFSVTPSPPRPESSGLNNAANNGTGPPAIVAGSSVSQPLSKHNSMESLQSAFVSRPISDSQLQLSQTSLEPSKEVRATSPSPLISSGITTGARNSTSENTQLTWPKMKPTDVQKYTKVFMEVDTDRDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAVLPNNLMFDETLLSMTGQSNIVHPNAAWGPRPGFGQQQPQVTARSMAPTVGLRPPTNVLASKVDGAKLSNEQKSRASVLQDSFLVDSEKGQQNSASLNAQDATAASGKMVGETANVILDSKEKIKFYRTMMQEIERKTELHQAIINIEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDDAAIWDEEWDKFEDEGFSNDLNFDTKGVSASKPKMSESQGEKGLADYNSTPDSSSNANEKTGNSLSTINHGLESDSVYSHSEDELAKSPYGSPAAKTSLESPSHEFSDAGYEKSPEAYRSFNESAWGAFDNNDDVDSVWGIKPVNTKEPDSEKHRDFFGNSDFDTSSVKTGSPNADSFFQRKSPFFDDSVPPTPLSRFGNSSPRYSDVGDHFFDHSSRFDSFSMQDGSFSPQREKFTRFDSISSSRDFGHNQEKFSRFDSMSSSMDFGQSNQRHARFDSIDSSRDFGHGHGAFSFDDTDPFGTSGPFKVSSESQSPKKSSDNWRAF 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 53576 65412 - Cp4.1LG06g00170.1 Cpe06g00014 470794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00014 967 MobiDBLite consensus disorder prediction 210 239 - -
Cpe06g00014 967 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Cpe06g00014 967 MobiDBLite consensus disorder prediction 663 716 - -
Cpe06g00014 967 PANTHER EH DOMAIN 892 967 - -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 257 297 - -
Cpe06g00014 967 SMART efh_1 3 31 IPR002048 GO:0005509
Cpe06g00014 967 SMART efh_1 37 65 IPR002048 GO:0005509
Cpe06g00014 967 SMART efh_1 364 392 IPR002048 GO:0005509
Cpe06g00014 967 SMART efh_1 398 426 IPR002048 GO:0005509
Cpe06g00014 967 MobiDBLite consensus disorder prediction 313 353 - -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 176 193 - -
Cpe06g00014 967 Pfam Cytoskeletal-regulatory complex EF hand 355 427 IPR000261 GO:0005515
Cpe06g00014 967 MobiDBLite consensus disorder prediction 865 917 - -
Cpe06g00014 967 Gene3D - 1 96 - -
Cpe06g00014 967 Coils Coil 554 574 - -
Cpe06g00014 967 SUPERFAMILY EF-hand 2 79 IPR011992 -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 787 801 - -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 176 297 - -
Cpe06g00014 967 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Cpe06g00014 967 MobiDBLite consensus disorder prediction 865 923 - -
Cpe06g00014 967 PANTHER EH DOMAIN 572 892 - -
Cpe06g00014 967 PANTHER EH DOMAIN 1 571 - -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 781 815 - -
Cpe06g00014 967 Pfam EF hand 5 21 IPR002048 GO:0005509
Cpe06g00014 967 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 572 892 - -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 656 753 - -
Cpe06g00014 967 CDD EH 4 70 IPR000261 GO:0005515
Cpe06g00014 967 ProSiteProfiles EH domain profile. 361 444 IPR000261 GO:0005515
Cpe06g00014 967 Gene3D - 355 444 - -
Cpe06g00014 967 MobiDBLite consensus disorder prediction 945 967 - -
Cpe06g00014 967 CDD EH 365 431 IPR000261 GO:0005515
Cpe06g00014 967 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 571 - -
Cpe06g00014 967 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 892 967 - -
Cpe06g00014 967 SUPERFAMILY EF-hand 351 444 IPR011992 -
Cpe06g00014 967 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Cpe06g00014 967 SMART eh_3 2 88 IPR000261 GO:0005515
Cpe06g00014 967 SMART eh_3 354 449 IPR000261 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00014 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1190.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00029 Cpe06g00014 CCT
Cpe02g00029 Cpe06g00014 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00633 Cpe-Chr4:6545891 Cpe06g00014 Cpe-Chr6:53576 4.01E-07 dispersed
Cpe06g00014 Cpe-Chr6:53576 Cpe15g00643 Cpe-Chr15:7137748 4.32E-07 dispersed
Cpe02g00029 Cpe-Chr2:149020 Cpe06g00014 Cpe-Chr6:53576 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36