Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00015 ATGACGTGGAAATTTAATACCCTTTTTGCTATATCCGACGGCCCCGGAGAGCGAAATCTAAAGGAGGCGTCTTTCTTCCCGCCGGCATCTCAGTTAACCAGTTCTAACCTACAGGTGGAAGACCCATCCTTGTATTGGCTCACCTCTTTTAGCCACTCTGATACTTCTCTCTCAGCACAGGAACAATCGCTAGGTTGTATGGCATTCGGCGCTTCCCGGCGCTATCTTTCGTATCAATTCAAAGGGTGCTTGTTGGGACGTCTCACCGGTGGCAGGTATCATTATCCCTTACCTTATCTGCCTTCGCTCTCATCGGCTTTATCATACTTGTCTTCAACCCTAGATGAACCATCAAATCTATTTGATGATGTTAGTGTTTTGGGTAATGGGATTCGGTATCAACGCAGTATCGACGAGCGCTTCGTTATGAGAGAGCTTTCTGATCTTTTACTAGTCAATCCTTATGGTTCGGTTTCTGACACCGTCAAAGAGAATCATACTGAGAAACAGATGTCAATTAGGACGGTTGATGGATTTTTACGACCAGAAGAAAAATTGCGAGGTGTTTTCCTTCAAAAACTGAATGGTAAAACAGCAATTGAACATGCTTTAGCTAATACTGATGTGAATTTGAGCCAAGATGTTGTGAACAAAGTACTGAACACGGGTAGTTTAGGTAGCGAAGCTATGATTACCTTCTTTGATTGGGCTATTAAGCAGCCGTCGATACCTACAGATACTTCTAGTTACAACATAATTCTTAAAGCTTTAGGTAGAAGAAGGTTTTTTGACTCAATGATGGATGTTTTGCACAACATGACACGGAAGGGAGTGATTGTGAATATGGAAACAGTATCCATTGTGGTAGACAGTTTGGTCAAGGCTCGCCAAGTTTCTAAGGCACTTCAATTATTCAAAAACTTGAAAGAATATGGGTTGAAATGTGACACTGAAACCTTGAATATTCTTCTACAATGCATGTGTCGACGATCTCACGTGGGCGCTGCAAGCTCCTTCTTTAATTTAATAAAGGGAAGTGTTCCTTTCAATGCTATGTCATATAACATTTTAATTAGTGGATGGTCAAGATATGGTAGGCTTAGTGAAGTTGAGAGAATTTTGAAAGCAATGGAAGCTGATGGATTTTCTCCAGATTGTCTGACCTACACTTATCTTCTTGAGTGTCTTGGCAGAGCTAATCGCATTGATGATGCTGTCAAGATCTTTGATGAAATGGTTGCAAAAGGCTGTACGCCAGATGTTGGTTCTTATAATGCAATGATCTCCAACTTTATATGCATAGGTGATTTTGATGAATGCCTGACCTATTACAAACGTATGTTGAGCAATAAATGTGAACCCGACATCAACACCTATTCCAATTTGATTATTGCCTTTCTTAAAGCCAAGAAAGTGGCTGATGCACTAGAAATGTTTGATGAGATGGTGGTAAGAATTATTCCCACTACGGGGGCAATAACATCCTTTATGAAACTTAGCTGTAGTTATGGTCCTCCGCACGCAGCTATGTTAATCTACAAAAAAGCAAAAAAAGTTGGATGTAGGATATCCAAGAATGCTTACAAATTGTTGCTTATGCGGCTTTCTTTGTTTGGTAAATTTGGTATGCTATTAAATATATGGAATGAGATGCAAGAAAGTGGTTATGATCTTGACGTGGAAACTTATGAACATGCCATTGACTGCCTTTGTAAAACAGGGCAGCTTGAAAATGCTGTACTTGTCATGGGGGAATGTTTACGTCAGGGTTTCTTACCAAGTAGGAAAATACGTAGTAAGCTTAATAACAAACTGTTGGCCTCTAACAGAACAGAGATGGCATATAGGCTCTGGTTGAAAATCAAAGTTGCTCGTCATCAGGACAATTTGCAAAGATGTCATGTCAATTACGAACAAGGTCCGTCGTTTGATACATACCTATGGGCTTTGGCTATTCATCTGGTGTCCAACGCCCTCATCTCAGCTCAGCTTGTTCTTCTGCTAAAGATCTTAAATCAAGTGTATGGATACGTGAATTGTACAGAG 2046 40.37 MTWKFNTLFAISDGPGERNLKEASFFPPASQLTSSNLQVEDPSLYWLTSFSHSDTSLSAQEQSLGCMAFGASRRYLSYQFKGCLLGRLTGGRYHYPLPYLPSLSSALSYLSSTLDEPSNLFDDVSVLGNGIRYQRSIDERFVMRELSDLLLVNPYGSVSDTVKENHTEKQMSIRTVDGFLRPEEKLRGVFLQKLNGKTAIEHALANTDVNLSQDVVNKVLNTGSLGSEAMITFFDWAIKQPSIPTDTSSYNIILKALGRRRFFDSMMDVLHNMTRKGVIVNMETVSIVVDSLVKARQVSKALQLFKNLKEYGLKCDTETLNILLQCMCRRSHVGAASSFFNLIKGSVPFNAMSYNILISGWSRYGRLSEVERILKAMEADGFSPDCLTYTYLLECLGRANRIDDAVKIFDEMVAKGCTPDVGSYNAMISNFICIGDFDECLTYYKRMLSNKCEPDINTYSNLIIAFLKAKKVADALEMFDEMVVRIIPTTGAITSFMKLSCSYGPPHAAMLIYKKAKKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDLDVETYEHAIDCLCKTGQLENAVLVMGECLRQGFLPSRKIRSKLNNKLLASNRTEMAYRLWLKIKVARHQDNLQRCHVNYEQGPSFDTYLWALAIHLVSNALISAQLVLLLKILNQVYGYVNCTE 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66155 69278 - Cp4.1LG06g00150.1 Cpe06g00015 470795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Cpe06g00015 682 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 118 634 - -
Cpe06g00015 682 Pfam Pentatricopeptide repeat domain 372 430 IPR002885 -
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Cpe06g00015 682 SUPERFAMILY TPR-like 299 483 IPR011990 GO:0005515
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Cpe06g00015 682 Pfam PPR repeat 452 483 IPR002885 -
Cpe06g00015 682 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Cpe06g00015 682 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Cpe06g00015 682 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Cpe06g00015 682 TIGRFAM PPR: pentatricopeptide repeat domain 249 281 IPR002885 -
Cpe06g00015 682 TIGRFAM PPR: pentatricopeptide repeat domain 458 485 IPR002885 -
Cpe06g00015 682 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Cpe06g00015 682 PANTHER OS02G0304800 PROTEIN 118 634 - -
Cpe06g00015 682 Gene3D Tetratricopeptide repeat domain 195 330 IPR011990 GO:0005515
Cpe06g00015 682 Gene3D Tetratricopeptide repeat domain 433 538 IPR011990 GO:0005515
Cpe06g00015 682 Gene3D Tetratricopeptide repeat domain 539 656 IPR011990 GO:0005515
Cpe06g00015 682 Gene3D Tetratricopeptide repeat domain 331 432 IPR011990 GO:0005515
Cpe06g00015 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Cpe06g00015 682 Pfam PPR repeat 284 313 IPR002885 -
Cpe06g00015 682 Pfam PPR repeat 562 591 IPR002885 -
Cpe06g00015 682 Pfam PPR repeat 249 278 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00015 - - - cmax:111476376 1092.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00015 Cpe-Chr6:66155 Cpe07g00858 Cpe-Chr7:7775551 4.69E-49 dispersed
Cpe06g00015 Cpe-Chr6:66155 Cpe13g00639 Cpe-Chr13:6101680 7.28E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00015 Cpe_Chr06 FPKM 11.997127 13.020333 13.453054 13.649012 18.862444 19.237326 21.277552 26.676992 27.741407 27.29521