Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00017 | ATGATGGAGTGGCAGAATCAGCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGCCGCCGATGGAGTTGGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTCCTAAGGCAGCAGATCTCTGTCTATGCTTCCATCTGTGACCAACTTGTCGAGATGCATAAGGCAATCACCGCCCAGCAGGACCTTGCCGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCTTGTGCTGCTGGTCACAAGATAACTGCTAGGCAGCGGTGGACGCCCACACCTGTGCAGCTTCAAATTCTTGAGCGGATTTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGATACAATATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGGAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACCGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAGCTTATGAACATTTTGTTCCGAAGTTGAGCAACGTGTATTCTCAGAGATCTGAATTAGGTGCTGAAATCCTTTCCTTTGACACACAAACGAATAAAGGGGAGCCCATGTTTCAATCTTTTGGATCTGGTCATATCAGTCAGATGACCCCAACACAGAATCATAGAAATAATATGTCAAATGAAAAAATGAACGTACCGGACTACTCTCCTTGTGAAGGATATCACTTGGTTGAGTGA | 816 | 44.49 | MMEWQNQQQQQNQTEQLQMQMQVEQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICDQLVEMHKAITAQQDLAGMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDITLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQAYEHFVPKLSNVYSQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNHRNNMSNEKMNVPDYSPCEGYHLVE | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 80276 | 82304 | - | Cp4.1LG06g00130.1 | Cpe06g00017 | 470797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00017 | 271 | Pfam | Homeodomain | 101 | 161 | IPR001356 | GO:0003677 | |
Cpe06g00017 | 271 | Gene3D | - | 103 | 167 | - | - | |
Cpe06g00017 | 271 | ProSiteProfiles | 'Homeobox' domain profile. | 97 | 162 | IPR001356 | GO:0003677 | |
Cpe06g00017 | 271 | MobiDBLite | consensus disorder prediction | 249 | 271 | - | - | |
Cpe06g00017 | 271 | MobiDBLite | consensus disorder prediction | 159 | 187 | - | - | |
Cpe06g00017 | 271 | SMART | HOX_1 | 99 | 166 | IPR001356 | GO:0003677 | |
Cpe06g00017 | 271 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 238 | IPR044559 | GO:0003700 | |
Cpe06g00017 | 271 | CDD | homeodomain | 101 | 163 | IPR001356 | GO:0003677 | |
Cpe06g00017 | 271 | PANTHER | - | 2 | 238 | - | - | |
Cpe06g00017 | 271 | SUPERFAMILY | Homeodomain-like | 100 | 163 | IPR009057 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00030 | Cpe06g00017 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00017 | Cpe-Chr6:80276 | Cpe14g01056 | Cpe-Chr14:8820899 | 1.60E-87 | dispersed | |
Cpe02g00030 | Cpe-Chr2:157492 | Cpe06g00017 | Cpe-Chr6:80276 | 2.05E-149 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49621 | PF00046 | Homeodomain | 5.50E-18 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00017 | - | - | bhj:120085747 | 470.7 |