Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00017 ATGATGGAGTGGCAGAATCAGCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGCCGCCGATGGAGTTGGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTCCTAAGGCAGCAGATCTCTGTCTATGCTTCCATCTGTGACCAACTTGTCGAGATGCATAAGGCAATCACCGCCCAGCAGGACCTTGCCGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCTTGTGCTGCTGGTCACAAGATAACTGCTAGGCAGCGGTGGACGCCCACACCTGTGCAGCTTCAAATTCTTGAGCGGATTTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGATACAATATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGGAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACCGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAGCTTATGAACATTTTGTTCCGAAGTTGAGCAACGTGTATTCTCAGAGATCTGAATTAGGTGCTGAAATCCTTTCCTTTGACACACAAACGAATAAAGGGGAGCCCATGTTTCAATCTTTTGGATCTGGTCATATCAGTCAGATGACCCCAACACAGAATCATAGAAATAATATGTCAAATGAAAAAATGAACGTACCGGACTACTCTCCTTGTGAAGGATATCACTTGGTTGAGTGA 816 44.49 MMEWQNQQQQQNQTEQLQMQMQVEQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICDQLVEMHKAITAQQDLAGMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDITLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQAYEHFVPKLSNVYSQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNHRNNMSNEKMNVPDYSPCEGYHLVE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 80276 82304 - Cp4.1LG06g00130.1 Cpe06g00017 470797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00017 271 Pfam Homeodomain 101 161 IPR001356 GO:0003677
Cpe06g00017 271 Gene3D - 103 167 - -
Cpe06g00017 271 ProSiteProfiles 'Homeobox' domain profile. 97 162 IPR001356 GO:0003677
Cpe06g00017 271 MobiDBLite consensus disorder prediction 249 271 - -
Cpe06g00017 271 MobiDBLite consensus disorder prediction 159 187 - -
Cpe06g00017 271 SMART HOX_1 99 166 IPR001356 GO:0003677
Cpe06g00017 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 238 IPR044559 GO:0003700
Cpe06g00017 271 CDD homeodomain 101 163 IPR001356 GO:0003677
Cpe06g00017 271 PANTHER - 2 238 - -
Cpe06g00017 271 SUPERFAMILY Homeodomain-like 100 163 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00030 Cpe06g00017 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00017 Cpe-Chr6:80276 Cpe14g01056 Cpe-Chr14:8820899 1.60E-87 dispersed
Cpe02g00030 Cpe-Chr2:157492 Cpe06g00017 Cpe-Chr6:80276 2.05E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49621 PF00046 Homeodomain 5.50E-18 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00017 - - bhj:120085747 470.7