Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00019 ATGGCATTCAATGTTTGGCTGTCTGGGGCCATGAGAAGATCAGCTCCGGCAACGACGCAGAACTGCATCAAATTTGACTCCGACGACGTGAACATCAACATCCCGCCGTTGCCCAGAGATCTATCGAAGGAAGCTTCAAACCTGAGTGGATCTAATCAATCGGGAGCAGAATATTCGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTAGTGAGGTTCGCCTCCCCCTAATTTCTACCACTCCAAAACACCGCCATCTTCGTGTTGTATGCTCCAGCAGTGATAAGAAGGGAGTACCCAATTCCAACTATGTTGTGCCGCTCAATAAATCATTTTCCGCAGCTAACTCATCCTGCATCACCCGACCCCTTGCCGAGATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATCGCCCAGAAAGTTCCTGAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGACGTTATATTCTCCGACAATGGAAGCGTGACTGTGGTGTATCGTGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATGGCAGTAATGAAGATCCTGTAGCTGCGGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGATTGATTCGAAATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAGGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA 1170 48.63 MAFNVWLSGAMRRSAPATTQNCIKFDSDDVNINIPPLPRDLSKEASNLSGSNQSGAEYSLSGPHLPALSSPLPSSHSVSEVRLPLISTTPKHRHLRVVCSSSDKKGVPNSNYVVPLNKSFSAANSSCITRPLAEILRDLNKRIPDNIAQKVPESATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCKACARFGLGLIRNERRKIEVGVEESRHQKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDE 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 86182 91044 - Cp4.1LG06g00340.1 Cpe06g00019 470799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00019 389 MobiDBLite consensus disorder prediction 36 62 - -
Cpe06g00019 389 PANTHER - 96 242 IPR037489 GO:0000724|GO:0003677
Cpe06g00019 389 MobiDBLite consensus disorder prediction 254 283 - -
Cpe06g00019 389 SUPERFAMILY HMG-box 268 354 IPR036910 -
Cpe06g00019 389 CDD HMGB-UBF_HMG-box 281 347 - -
Cpe06g00019 389 MobiDBLite consensus disorder prediction 367 389 - -
Cpe06g00019 389 Pfam HMG (high mobility group) box 281 350 IPR009071 -
Cpe06g00019 389 Gene3D High mobility group box domain 264 366 IPR036910 -
Cpe06g00019 389 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 281 350 IPR009071 -
Cpe06g00019 389 MobiDBLite consensus disorder prediction 44 59 - -
Cpe06g00019 389 MobiDBLite consensus disorder prediction 351 389 - -
Cpe06g00019 389 SMART hmgende2 280 351 IPR009071 -
Cpe06g00019 389 Coils Coil 332 352 - -
Cpe06g00019 389 PANTHER DNA REPAIR RAD52-LIKE PROTEIN 2, CHLOROPLASTIC 96 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00019 - - - csv:101203655 302.367
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00030 Cpe-Chr2:157492 Cpe06g00019 Cpe-Chr6:86182 2.15E-50 dispersed
Cpe06g00019 Cpe-Chr6:86182 Cpe19g00286 Cpe-Chr19:2478017 4.04E-40 dispersed
Cpe02g00032 Cpe-Chr2:164832 Cpe06g00019 Cpe-Chr6:86182 1.51E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004593 1 1 2 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 6 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49622 PF00505 HMG_box 3.00E-22 CL0114 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00019 Cpe_Chr06 FPKM 26.50234 30.358286 16.504719 14.184398 13.143873 16.068592 13.149127 16.597557 16.2414 15.243185