Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00025 ATGATGGATAAGAAGGAGAAAAACTCCCTCACGGTGGCTCCTTTTGAGTGTGCTTGGCTCAAGGATTTAAGATTTCGGGAAGCTGGACGGGGTTGTGTGGCTTTTGAAGCTTCCGCTCATAACGATGTCACGTTAGTGTTCCGAGAGAATGTGGGGAGTCAACATTACCATTACAAACGAGATAGCTGTCCTCATTATACGGTTATATTAGGTAGTCACCGAAATCGACGTCTAAGGATTATAGCCGATGGGAGAACTGTTGTTGATGAAGAGGGTGTTGCTCTTTGCAGTTCCTCTGCGTTCCAGAGCTATTGGATCAGTGTCTATGATGGTTTGATCAGCATTGGGAAGGGGAGATATCCTTTTCAGAATCTGGTCTTTCAATGGCTTGATACAAATCCAAACTGTAGTGTTCAATATATTGGGCTTAGTAGCTGGGATAAACACGTGGGATATAGAAATGTTAATGTTTTGCCGCCGACGCAGGACCATATTTCCTTGTGGAAGCATGTGGATAATGGCGTTGAAGGCGAAGAAGACGTGGAACTGGAGTTAGAAGATGAATACACAGATTACAAGAGCTGGGGCCTCGAACATTTTCTAGAAAATTGGGATTTATCAGATGTACTTTTTAGTGTAGATTCTGGGGAAACACTTGTACCTGCTCACAAGGCTATCTTAGTTGCTTCGGGAAATTTTCCCTTGAATCTGTCGCAAGATGTTGTGCAGCTACATGGAGTATCATATCCAGTTCTCCATGCTCTTCTTCAATATATTTACACAGGTCAAACTGAGATTCTAGAGTCTGAACTTGGTTCCTTGAGGGATCTTGCATTACAACTTGAAGTGAATGCTTTAGTGAACCAGTGTGATGACATGATGGAACAATTAAAACGGAACAAAAAGTTGTTGGACTCGGGTAAGAGGGTGGAATTATTATATCCAAGGATTCAGCCCCATTGTACTACAGTCTTCCCCTCCGGGATTCCATTAAATGTGCAGAGGCTCAAACAATTGCAATGTACTGGCGAGTTCAGTGATGTATGTATTTATATACAAGGTCACGGGTTTGTTGCTCATGTGCACAAAATCATTCTTAGCTTGTGGAGCATGCCATTTGAAAGGATGTTTACCAATGGAATGAGTGAAACAACGTCTTCTGAGGTTTATATTAGGGACGTATCACCAGAAGCTTTTCAAACCATGCTCAAGTTCATGTATAGTGGAGAACTCAGTAAAGATGTTACAATGGAATCTGATGTCTTGTTACTTCAACTACTATTTTTAGCTGATCAATTTGGTGTTACTCTTCTTCATCAAGAATGCTGCAAAATACTTCTAGAATGCCTTTCGGAGATAAAAGGGGGAGCGTCATGCAGGATGGAGTCTCCTAGTGGAAGATGGTCATACATCAAGATTTTTTGTTTATGCACAAGTTTAATGGACGAGGAAGCAGACAATTTTGGGAAAGTTGTAGGACTTGCTTCCGAAGCTAACTGTCGAACTTTGTTGCAGGATTCAGTATGTTCCATCCTTCAAGTTGTTTCATCAATTCCATGCTGTAAGCTCATTGAAGAAATTTGTGAGAGGAAGTTTTCAATGCACTTTGATTATTGTACGACTGCAAACATTGAATTTGTCATATTAGATGAGTCAACTTTCCGCAAAATCCTTCAGTGTCCTGATTTGACAGTGACGTCCGAGGAAAAAGTACTGAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATTATGTGGGTGGATGGCAGTAGATGAGCTTATGACATTTTCAACCCCTGATATCCTTTTTGGTGAGCGACTTCAGTCAGTTCAGGATTTACTTTCTTTCGTGCGATTTCCGTTACTCCCATACGCCTTGTTGGAGAAGTTGGAGAACAGCAGCATTAGCAGGAAGATTCTTACCTTTCAGAATCTTGTGAAGGAGGCTATCAACTTCGTGAAACTTGAACCATCAAGGCTAGAGGACAAGAAAAAGAACAATGTGAGATTTCAACATCGCCGGTCTAGTTATAAGGAGCTACAGTACATTTGTGATGGGGACAGCAATGGAGTTCTATTCTTTGCCGGTACATCATATGGAGAGCACCCATGGGTTAATCCCATTCTTTCTAAGAAAATTACTATTACGGCAAGCAGTCCACCTTCAAGGTACACAGATCCGAAGGTTCTGGTCTCGAGAACTTACCAGGGAACTTCATTTGCCGGCCCTCGCCTGGAAGATGGGCAAACTTATTCATGGTGGATGGTTGATATTGGTGAAGATCATCAGCTGATGTGCAATTACTATACACTGAGACAAGATGGGTCAAGAGCATTTATCAGATATTGGAATCTCCAGGGGTCAATCGATGGGAAAACTTGGACAAACTTGCGAGTACACGAGAACGATCAGACGGTGTGCAAGCCTGGTCAGTTTGCGTCGTGGCCCGTAACTGGACCAAACTCTTTACTTCCATTTAGGTTCTTCCGTGTTCTTCTCACAGCCCCAACAACTGATGCTTCAAATCCGTGGAACTTGTGCATTTGCTTTCTGGAACTGTATGGCTACTTCCTCTAG 2580 42.25 MMDKKEKNSLTVAPFECAWLKDLRFREAGRGCVAFEASAHNDVTLVFRENVGSQHYHYKRDSCPHYTVILGSHRNRRLRIIADGRTVVDEEGVALCSSSAFQSYWISVYDGLISIGKGRYPFQNLVFQWLDTNPNCSVQYIGLSSWDKHVGYRNVNVLPPTQDHISLWKHVDNGVEGEEDVELELEDEYTDYKSWGLEHFLENWDLSDVLFSVDSGETLVPAHKAILVASGNFPLNLSQDVVQLHGVSYPVLHALLQYIYTGQTEILESELGSLRDLALQLEVNALVNQCDDMMEQLKRNKKLLDSGKRVELLYPRIQPHCTTVFPSGIPLNVQRLKQLQCTGEFSDVCIYIQGHGFVAHVHKIILSLWSMPFERMFTNGMSETTSSEVYIRDVSPEAFQTMLKFMYSGELSKDVTMESDVLLLQLLFLADQFGVTLLHQECCKILLECLSEIKGGASCRMESPSGRWSYIKIFCLCTSLMDEEADNFGKVVGLASEANCRTLLQDSVCSILQVVSSIPCCKLIEEICERKFSMHFDYCTTANIEFVILDESTFRKILQCPDLTVTSEEKVLNAILMWGLEASELCGWMAVDELMTFSTPDILFGERLQSVQDLLSFVRFPLLPYALLEKLENSSISRKILTFQNLVKEAINFVKLEPSRLEDKKKNNVRFQHRRSSYKELQYICDGDSNGVLFFAGTSYGEHPWVNPILSKKITITASSPPSRYTDPKVLVSRTYQGTSFAGPRLEDGQTYSWWMVDIGEDHQLMCNYYTLRQDGSRAFIRYWNLQGSIDGKTWTNLRVHENDQTVCKPGQFASWPVTGPNSLLPFRFFRVLLTAPTTDASNPWNLCICFLELYGYFL 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 129128 135853 + Cp4.1LG06g00200.1 Cpe06g00025 470805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00025 859 Pfam BTB And C-terminal Kelch 515 579 IPR011705 -
Cpe06g00025 859 SMART BACK_2 509 632 IPR011705 -
Cpe06g00025 859 Gene3D - 710 857 - -
Cpe06g00025 859 Gene3D - 533 654 - -
Cpe06g00025 859 SMART BTB_4 346 450 IPR000210 GO:0005515
Cpe06g00025 859 SMART BTB_4 207 298 IPR000210 GO:0005515
Cpe06g00025 859 ProSiteProfiles BTB domain profile. 346 415 IPR000210 GO:0005515
Cpe06g00025 859 Gene3D Potassium Channel Kv1.1; Chain A 331 452 IPR011333 -
Cpe06g00025 859 ProSiteProfiles BTB domain profile. 207 268 IPR000210 GO:0005515
Cpe06g00025 859 SUPERFAMILY POZ domain 332 447 IPR011333 -
Cpe06g00025 859 Pfam F5/8 type C domain 716 848 IPR000421 -
Cpe06g00025 859 PANTHER OS05G0345500 PROTEIN 1 858 - -
Cpe06g00025 859 Pfam Farnesoic acid 0-methyl transferase 53 150 IPR022041 -
Cpe06g00025 859 Gene3D Potassium Channel Kv1.1; Chain A 192 311 IPR011333 -
Cpe06g00025 859 SUPERFAMILY POZ domain 195 294 IPR011333 -
Cpe06g00025 859 CDD BTB_POZ_ZBTB_KLHL-like 345 421 - -
Cpe06g00025 859 SUPERFAMILY Galactose-binding domain-like 701 858 IPR008979 -
Cpe06g00025 859 Pfam BTB/POZ domain 336 448 IPR000210 GO:0005515
Cpe06g00025 859 Pfam BTB/POZ domain 198 296 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00025 - - - csv:101222966 1493.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00025 Cpe-Chr6:129128 Cpe01g02054 Cpe-Chr1:17408277 3.77E-07 dispersed
Cpe06g00025 Cpe-Chr6:129128 Cpe06g00858 Cpe-Chr6:5575625 4.28E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00025 Cpe_Chr06 FPKM 30.699715 33.829929 18.895599 18.751673 15.955198 17.049522 15.850943 19.360249 17.061085 16.665836