Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00026 ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGA 603 51.58 MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRGAVPSARR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 135001 139912 - Cp4.1LG06g00310.1 Cpe06g00026 470806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00026 200 Gene3D - 3 74 - -
Cpe06g00026 200 SUPERFAMILY Sm-like ribonucleoproteins 7 74 IPR010920 -
Cpe06g00026 200 SMART Sm3 78 143 IPR001163 -
Cpe06g00026 200 SMART Sm3 10 75 IPR001163 -
Cpe06g00026 200 Gene3D - 75 154 - -
Cpe06g00026 200 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 72 IPR027141 GO:0006396
Cpe06g00026 200 CDD Sm_D3 8 76 IPR034099 GO:0000387|GO:0005681
Cpe06g00026 200 CDD Sm_D3 76 145 IPR034099 GO:0000387|GO:0005681
Cpe06g00026 200 Pfam LSM domain 11 74 IPR001163 -
Cpe06g00026 200 Pfam LSM domain 79 142 IPR001163 -
Cpe06g00026 200 SUPERFAMILY Sm-like ribonucleoproteins 76 195 IPR010920 -
Cpe06g00026 200 MobiDBLite consensus disorder prediction 181 200 - -
Cpe06g00026 200 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 71 196 IPR027141 GO:0006396
Cpe06g00026 200 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 1 72 - -
Cpe06g00026 200 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 71 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00026 K11088 SNRPD3, SMD3; small nuclear ribonucleoprotein D3 - csv:101222727 228.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00038 Cpe06g00026 CCT
Cpe02g00038 Cpe06g00026 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00913 Cpe-Chr2:6955734 Cpe06g00026 Cpe-Chr6:135001 1.64E-10 dispersed
Cpe05g00014 Cpe-Chr5:58820 Cpe06g00026 Cpe-Chr6:135001 3.25E-07 dispersed
Cpe05g01570 Cpe-Chr5:10801949 Cpe06g00026 Cpe-Chr6:135001 1.67E-10 dispersed
Cpe06g00026 Cpe-Chr6:135001 Cpe06g00907 Cpe-Chr6:6250173 6.05E-08 dispersed
Cpe02g00038 Cpe-Chr2:205186 Cpe06g00026 Cpe-Chr6:135001 4.21E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g101 Blo01g01633 Blo12g00856 . Bda03g00317 Bpe02g00312 Bpe04g00278 Bma04g00285 Bma01g02407 . . Cma01g02010 Cma09g00059 Car01g01580 . . Cpe06g00026 . . . . . . . . . . . . . . . Cone4ag2016 Cone7ag1932 Cone17ag1450 Cone20ag0026 Lsi04g01802 Csa04g02696 . . . . Bda11g00968 . . . . . Sed08g2261 Cmo01g02068 Cmo09g00059 . . . Car09g00050 . Cpe02g00038 Bhi09g02896 Tan01g5100 Cmetu07g0611 . Hepe01g2336 . . Cla11g01819 Cam11g1885 Cec11g1910 Cco11g1917 Clacu11g2049 Cmu11g1854 Cre11g2259 . . Chy07g00387 Cme07g00060
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003457 2 1 2 2 2 0 2 1 0 1 1 1 2 1 1 2 0 4 2 1 1 3 1 1 1 1 0 2 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00026 Cpe_Chr06 FPKM 3.19685 3.164849 1.387207 0.359441 356.518311 302.327576 368.932281 4.705193 5.171402 3.442275