Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00027 ATGGCGGAGCAGGAGAGGAATAAGTACAGTTTAACTGTCCCAACCTACAACGAGCGCCTCAATATTTCTCTGCTTGTCTACCTCATTCTCAAGCACCTCCCGTACGTATCCCTCTCGCTGCTTGTAATCCTATTGAGAGTCAGACCTGGGAAGCTTGGACTAGGAACGGGTTACTGTCATGGTCTCAAGCATGCAACTGGTAATTTTGTTGTTATAATGAATGCTGACTTACCTCACCATGTTTCGACTGGATCAAGGAAGCAGTTACAAACGGGTGCCGATATAGTTGCAGGAACCCGATATGTGAAAGGTGGCGGTGTACATGGATGGAATCTTATGTGCAAACTAACCATTGGAGGTGCTAACGTTCTTGCCCAAACACTTTTATGGCCTGGTGTATCAGATTTAACTGGATCTTTCCGGCTCTACAAGAAATCGGTGCTTGACGATATCATTAGCTCAGTTGTTAGCAAGGGATATATCTTTCAAATGGAGATGATTGTTCGAGCTTCAAGAAATGGTTATCACATTGAAGAGGTTCCAATTACCTTTGTTGATAGAGTGTTTGGAACTTCCAAGCTGGGAGGATCTGAGATTGTAGAGTATTTGAAAGGTCTCTTGGTACCCTCTGGTCACCACATGATGCACAAATATAGTGAATTTATTGAGTTGCCAGTTGCACACCAGGAGAATCGCATGCTCATTGATTCTTCTCTGCATAATCCATGGACGGAATGGACCGCTGCTCTGCCAATTACCTTCCTCTCACTCCAATCACCTTCTTGCAGCGCTCCGCCGCGGTCTACGGCGACCGGATTTCTCTCGTCTATGAACGTGTTCAATACACTTGGAGAGAGACGCTTTTCCGATGTACCAGGCTCGCTTCTGCTCTTGTTCGAATGGGAATCGCTCGTGGAGATGTGGTTGCTGCCTTGGCACCGAATATTCCAGCTATGTACGAGCTACATTTTGCTGTACCGATGGCTGGTGCAGTTCTTTGCTCCCTCAACGTACGCCATGATGCGGCAATGGTTTCTACACTGTTGA 1047 46.42 MAEQERNKYSLTVPTYNERLNISLLVYLILKHLPYVSLSLLVILLRVRPGKLGLGTGYCHGLKHATGNFVVIMNADLPHHVSTGSRKQLQTGADIVAGTRYVKGGGVHGWNLMCKLTIGGANVLAQTLLWPGVSDLTGSFRLYKKSVLDDIISSVVSKGYIFQMEMIVRASRNGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLLVPSGHHMMHKYSEFIELPVAHQENRMLIDSSLHNPWTEWTAALPITFLSLQSPSCSAPPRSTATGFLSSMNVFNTLGERRFSDVPGSLLLLFEWESLVEMWLLPWHRIFQLCTSYILLYRWLVQFFAPSTYAMMRQWFLHC 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 140191 146292 + Cp4.1LG06g00240.1 Cpe06g00027 470807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00027 348 Pfam Glycosyl transferase family 2 45 151 IPR001173 -
Cpe06g00027 348 SUPERFAMILY Nucleotide-diphospho-sugar transferases 8 196 IPR029044 -
Cpe06g00027 348 PANTHER DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 43 207 IPR039528 GO:0004582
Cpe06g00027 348 PANTHER DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 3 42 IPR039528 GO:0004582
Cpe06g00027 348 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 197 IPR029044 -
Cpe06g00027 348 CDD DPM1_like 13 207 IPR039528 GO:0004582
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00027 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] - csv:101222489 316.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00039 Cpe-Chr2:207812 Cpe06g00027 Cpe-Chr6:140191 7.13E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g112 . . . . . . . . . . . . Car01g01579 . . Cpe06g00027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g02067 Cmo09g00060 . . . Car09g00051 . . Bhi09g02898 Tan01g5098 . . Hepe01g2335 . . Cla11g01818 Cam11g1884 Cec11g1909 Cco11g1916 Clacu11g2048 Cmu11g1853 Cre11g2258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008872 1 2 2 1 1 0 2 0 0 1 0 0 0 1 1 3 0 2 2 0 1 2 1 1 1 1 1 2 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00027 Cpe_Chr06 FPKM 1.503765 2.233833 32.03751 33.283409 1.091655 0.0 1.153678 8.901017 10.133414 12.936245