Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00028 ATGCACAGGGCAAGGTTTCGTTTGGGATCGATAGCTGACTCGCTATACAGATTCAGGCCACACGAACATGGGCGAAAACAGGATGCGAATAAGATGGTATTCCGTCGAGCTCTTCTCATCTCCCAAGGTATTGAATATTTGGGAAATGAAGCCGAGTCAACTAAGTTCATGCAGAGACAGATTGTCGATGCACTTCGAGTGGGCGATAGAAGTAGTGCTTCCAATCTGCTCATGGAACTTGGCCAGGAAAAACACTCTTTAACTGCAGATAATTTTGTTGGCATTTTGAGCTACTGTGCAAGATCACCTGATCCACTGTTTGTCATGGAAACTTGGAAAATAATGGAAGAAAGAGGAGTTTTTCTGGATAACACATGCACTTTACTTATGATAAAAGCACTCTGTAAGGGCGGTTACTTGGATGAGGCATTTGGTCTAATAAGTTTCCTGGCAGAAAGTCGTGTCATGTTTCCTGTTCTGCCTGTGTACAATCTTTTTTTGAGAGCCTGTGGCAAAAGGCAAAGTACGGTTCATGTTAGTCAATGTTTGGATATGATGGATCGCAGAATGGTCGGGAAGAATGAAGCTACATATTCTGAGCTACTCAAGGTTGCAGTTTGTCAGAAAAATTTGTCTTCTGTGCATGAAATTTGGACAGACTTTGTAAAAAATTACAGTCCAAGTGTTTTATCTCTAAGAAAGTTTATATGGTCTTATACAAGGCTGGGAGACCTAAAATCTGCATATACTGCACTGCAAAAGATGGTGGCTTTGGTTATTGGAGCCGCAGGACAAAAGTTACCCTCTTTAGAATTGGACATTCCTGTACCCTTAAGAACTGAATCCTATCATGAAAATTTTAATTTCGAGGAAAATGGACCTTCTACCGACGAGTTGTACTGTAAGAAAATGGTCCCCTGCGAAGGTGACATTGGGCAATTTTCTGTTAATGGTATGAAGTGTGGAGAAGTTGAAAGTGGTCGATTAACTTTGCCGAGCAATTACAGAAGCAATTTTGTTATGAAGGTTTTGAGGTGGTCTTTCAATGATGTGATATGTGCATGTGCGCTTACTAGGAACTGTGGTCTTGCAGAGCAGTTAATGCAACAGTTTAGCAGCATTTCATGTGTACTGACGACACTAGGGTTCATTTCTTTGAAGATGCATGAACTGGGATTGCAACCTTCGTCCCACACATTTGATGGTTTTGTTAGATCAGTTGTTTCAGAGAGAGGTTTCAGTGATGGCATTAAAATAGATCAGCCAGAACGTGCCATGCGTATGTTGGTTAAAATGAAACAAATGGAGGTGCTTCCAGATGTGAAGACCTATGAGCTTTTATATTCATTATTTGGTAACGTGAATGCTCCATACGAGGAGGGCAACAGATTGTCACAGGTGGATGCTGCAAAAAGGATACGCATGATAGAGATGGATATGGAGAAACATGGGATACAACACAGTCATTTCTCTATGATGAACTTGTTGAAAGCTCTTGGTGCGGAGGGGATGACGAAGGAGCTTCTTCAGTATTTAAATGTGGCAGAGAACCTCTTCTATTACGATAACACTTGTCTGGGGACGCCTATTTACAACACAGCGTTGCATTTTTTAGTTGAATCCAAAGAGATCCATATGGCAATAGAATTATTCAATAATATGAAGCATTCTGGTCTCTTTCCAGATGCTGCGACATTTGAGATGATGATCAACTGTTGCAGTGTTATCGGATGCTTGAAATCTGCGTTTGCTCTTCTCTCCCTGATGATTCGCTCCGGGTTTTGTCCTCAGATATTAACTTATACCAGTCTAGTAAAGATTGTGCTGGGATTTGAGAGATTTGATGATGCCTTGAATCTCTTAGATCAAGCCAGTTCAGAAGGGATTGAACTTGATGTTGTTATAATGAATACAATCGTGCAGAAAGCTTGTGAAAAGATGAAGCGCGAAAAGATCCAGCCCGACCCTTCAACGTGCCATAGTGTCTTCTCGGCATATGTGAGCCTTGGCTATCACAGCACCGCCATGGAAGCACTGCAAGTACTGAGCATGCGTATGCTATGCAAAGAACACGACACTTCTCCAGTCGTTACAGAATATGTCGAAGACTTTGTGCTTGCAGAAGACTCCGAAGCGGAATCACGGATTTTGGAATTCTTCAAATGCTCTGAAGAGAGCCTAAGTTTTGCCCTTCTCAACTTGAGATGGTCTGCCATGCTGGGATATTCCCTTTGTTCTTCCCCTAATCAGAGTCCATGGGCAATGAGACTTGCAAGTTCCTATGATGATGGCTACACAGCCTAA 2304 42.01 MHRARFRLGSIADSLYRFRPHEHGRKQDANKMVFRRALLISQGIEYLGNEAESTKFMQRQIVDALRVGDRSSASNLLMELGQEKHSLTADNFVGILSYCARSPDPLFVMETWKIMEERGVFLDNTCTLLMIKALCKGGYLDEAFGLISFLAESRVMFPVLPVYNLFLRACGKRQSTVHVSQCLDMMDRRMVGKNEATYSELLKVAVCQKNLSSVHEIWTDFVKNYSPSVLSLRKFIWSYTRLGDLKSAYTALQKMVALVIGAAGQKLPSLELDIPVPLRTESYHENFNFEENGPSTDELYCKKMVPCEGDIGQFSVNGMKCGEVESGRLTLPSNYRSNFVMKVLRWSFNDVICACALTRNCGLAEQLMQQFSSISCVLTTLGFISLKMHELGLQPSSHTFDGFVRSVVSERGFSDGIKIDQPERAMRMLVKMKQMEVLPDVKTYELLYSLFGNVNAPYEEGNRLSQVDAAKRIRMIEMDMEKHGIQHSHFSMMNLLKALGAEGMTKELLQYLNVAENLFYYDNTCLGTPIYNTALHFLVESKEIHMAIELFNNMKHSGLFPDAATFEMMINCCSVIGCLKSAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELDVVIMNTIVQKACEKMKREKIQPDPSTCHSVFSAYVSLGYHSTAMEALQVLSMRMLCKEHDTSPVVTEYVEDFVLAEDSEAESRILEFFKCSEESLSFALLNLRWSAMLGYSLCSSPNQSPWAMRLASSYDDGYTA 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 146734 153004 + Cp4.1LG06g00270.1 Cpe06g00028 470808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00028 767 TIGRFAM PPR: pentatricopeptide repeat domain 530 563 IPR002885 -
Cpe06g00028 767 TIGRFAM PPR: pentatricopeptide repeat domain 565 596 IPR002885 -
Cpe06g00028 767 Pfam PPR repeat 130 148 IPR002885 -
Cpe06g00028 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Cpe06g00028 767 Pfam PPR repeat family 530 573 IPR002885 -
Cpe06g00028 767 Gene3D Tetratricopeptide repeat domain 54 226 IPR011990 GO:0005515
Cpe06g00028 767 Gene3D Tetratricopeptide repeat domain 341 523 IPR011990 GO:0005515
Cpe06g00028 767 Gene3D Tetratricopeptide repeat domain 524 728 IPR011990 GO:0005515
Cpe06g00028 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 419 762 - -
Cpe06g00028 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 418 - -
Cpe06g00028 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00028 - - - cmax:111476573 1174.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00028 Cpe-Chr6:146734 Cpe06g00289 Cpe-Chr6:1585763 8.61E-06 dispersed
Cpe11g00795 Cpe-Chr11:6427511 Cpe06g00028 Cpe-Chr6:146734 1.44E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00028 Cpe_Chr06 FPKM 1.990318 2.175842 42.640747 40.099808 2.024114 1.658386 1.791383 13.522117 12.499808 13.241844