Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00035 ATGGCGGTATACGGCGGCGACGTTCCCGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACGAAAATCTTCCACAGCAAACGCCGCCCAATCCCGCTTCCCCCTAATCAATCCCTCGATGCGACGACGTTTATCTCATCCCGCCCCCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACACATCACCTATTCCCACCTCTGGGAGTCTGTCGACTCCGTAGCCTCCTCCCTTTCCGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAACTCCATTTTCTTCCCCATTATTTGCCTCGCCGTCATGTCCCTCGGCGCCGTCATCACCACCACAAACCCCCTCAACACCCCTCAAGAAATCGCCAAACAGATCGCCGATTCCAACCCCATCTTAGCCTTCACCACCCAACAACTAATCCCCAAAATCGCCAGTTCCAAATTGCCAGTCGTCCTGATCGACGGTGAAATTCAAATTAAAAAATTCCCAGTCAAAATCGTGTCGACGCTGAGCGATATGATGAGGAAAAAATCCAGTGGAAGTCGAGTTAAGGAGCGTGTGGACCAAAACGACACAGCGACTCTGCTTTACTCCTCTGGAACGACAGGGGCCAGCAAGGGCGTAGTGTCGTCTCACAAGAATCTAATTGCGATGGTTCAAGTCGTTGTGACGAGGTTCAAATTGAGCGAAGGGGAAGGGACTTTTATTTGTGCCTCGGCAGAATTAGAGGCATTGTTGCTCACTCATCCCAGTATCTCCGATGCAGCTGTAATTCCATATCCAGACAAAGAGGTTGGACAGTATCCAATGGCTTACGTGGTAAGAAAGGGTGGAAGTGACATTTCACATGAAGATACAATGCAATTCGTGGCAAGACAGGTGGCACCGTACAAGAGAATCCGGCGGGTTGCGTTCGTGGATTCCATTCCCAAGAACCCCTCCGGTAAGATTCTGAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTCTGA 1014 51.28 MAVYGGDVPEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESVDSVASSLSDMGIRKGHVILLLSPNSIFFPIICLAVMSLGAVITTTNPLNTPQEIAKQIADSNPILAFTTQQLIPKIASSKLPVVLIDGEIQIKKFPVKIVSTLSDMMRKKSSGSRVKERVDQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICASAELEALLLTHPSISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDTMQFVARQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSKL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 175728 178200 + Cp4.1LG06g00470.1 Cpe06g00035 470815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00035 337 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Cpe06g00035 337 PANTHER BNAA06G14440D PROTEIN 10 230 - -
Cpe06g00035 337 Pfam AMP-binding enzyme C-terminal domain 248 323 IPR025110 -
Cpe06g00035 337 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 230 - -
Cpe06g00035 337 Pfam AMP-binding enzyme 50 237 IPR000873 -
Cpe06g00035 337 Gene3D - 251 332 IPR045851 -
Cpe06g00035 337 Gene3D - 62 235 - -
Cpe06g00035 337 PANTHER BNAA06G14440D PROTEIN 244 336 - -
Cpe06g00035 337 SUPERFAMILY Acetyl-CoA synthetase-like 245 334 - -
Cpe06g00035 337 Gene3D - 67 218 - -
Cpe06g00035 337 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 244 336 - -
Cpe06g00035 337 SUPERFAMILY Acetyl-CoA synthetase-like 44 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01259 Cpe-Chr1:7535054 Cpe06g00035 Cpe-Chr6:175728 4.66E-47 dispersed
Cpe06g00035 Cpe-Chr6:175728 Cpe15g00179 Cpe-Chr15:1464272 1.19E-15 dispersed
Cpe06g00035 Cpe-Chr6:175728 Cpe20g00318 Cpe-Chr20:1796227 4.61E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00035 K10526 - csv:101221396 413.69