Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00043 ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTGTTCAAGTTCTCTCCTACAACAACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTTAGTCTTCTCTACCACTACGAGCAAGTTTACATGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATACCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCAGACAGCGACACTCTGGTCGGCGACACCGGAGGAGCCGGAGAAAGGGAGACCCGAACCACCCCAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTCAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG 885 49.04 MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYMFRRQGPICAPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEEEPTPSDLRPQPTNAIVPYTGTRQRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAANYSKQGE 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 227366 229915 + Cp4.1LG06g00400.1 Cpe06g00043 470823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00043 294 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 144 - -
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 144 - -
Cpe06g00043 294 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cpe06g00043 294 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cpe06g00043 294 Gene3D - 25 127 IPR036431 GO:0003677
Cpe06g00043 294 Coils Coil 263 283 - -
Cpe06g00043 294 Gene3D High mobility group box domain 191 285 IPR036910 -
Cpe06g00043 294 CDD HMGB-UBF_HMG-box 207 271 - -
Cpe06g00043 294 MobiDBLite consensus disorder prediction 1 23 - -
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 174 285 - -
Cpe06g00043 294 SMART bright_3 30 121 IPR001606 GO:0003677
Cpe06g00043 294 MobiDBLite consensus disorder prediction 171 185 - -
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 174 285 - -
Cpe06g00043 294 SMART ARID_2 26 116 - -
Cpe06g00043 294 SUPERFAMILY HMG-box 204 277 IPR036910 -
Cpe06g00043 294 SMART hmgende2 206 275 IPR009071 -
Cpe06g00043 294 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 207 274 IPR009071 -
Cpe06g00043 294 Pfam HMG (high mobility group) box 207 274 IPR009071 -
Cpe06g00043 294 MobiDBLite consensus disorder prediction 152 214 - -
Cpe06g00043 294 MobiDBLite consensus disorder prediction 188 204 - -
Cpe06g00043 294 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00043 - - - cpep:111797158 555.444
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00052 Cpe06g00043 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00012 Cpe-Chr2:85595 Cpe06g00043 Cpe-Chr6:227366 2.67E-07 dispersed
Cpe06g00043 Cpe-Chr6:227366 Cpe17g00251 Cpe-Chr17:1660205 7.96E-29 dispersed
Cpe02g00052 Cpe-Chr2:275504 Cpe06g00043 Cpe-Chr6:227366 1.28E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49624 PF01388 ARID 2.50E-18 CL0123 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00043 Cpe_Chr06 FPKM 32.724525 31.590853 33.973408 34.690407 23.053457 22.692163 23.130835 5.89662 5.694095 5.277778