Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00043 ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTGTTCAAGTTCTCTCCTACAACAACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTTAGTCTTCTCTACCACTACGAGCAAGTTTACATGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATACCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCAGACAGCGACACTCTGGTCGGCGACACCGGAGGAGCCGGAGAAAGGGAGACCCGAACCACCCCAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTCAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG 885 49.04 MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYMFRRQGPICAPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEEEPTPSDLRPQPTNAIVPYTGTRQRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAANYSKQGE 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 227366 229915 + Cp4.1LG06g00400.1 Cpe06g00043 470823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00043 294 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 144 - -
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 144 - -
Cpe06g00043 294 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cpe06g00043 294 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cpe06g00043 294 Gene3D - 25 127 IPR036431 GO:0003677
Cpe06g00043 294 Coils Coil 263 283 - -
Cpe06g00043 294 Gene3D High mobility group box domain 191 285 IPR036910 -
Cpe06g00043 294 CDD HMGB-UBF_HMG-box 207 271 - -
Cpe06g00043 294 MobiDBLite consensus disorder prediction 1 23 - -
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 174 285 - -
Cpe06g00043 294 SMART bright_3 30 121 IPR001606 GO:0003677
Cpe06g00043 294 MobiDBLite consensus disorder prediction 171 185 - -
Cpe06g00043 294 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 174 285 - -
Cpe06g00043 294 SMART ARID_2 26 116 - -
Cpe06g00043 294 SUPERFAMILY HMG-box 204 277 IPR036910 -
Cpe06g00043 294 SMART hmgende2 206 275 IPR009071 -
Cpe06g00043 294 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 207 274 IPR009071 -
Cpe06g00043 294 Pfam HMG (high mobility group) box 207 274 IPR009071 -
Cpe06g00043 294 MobiDBLite consensus disorder prediction 152 214 - -
Cpe06g00043 294 MobiDBLite consensus disorder prediction 188 204 - -
Cpe06g00043 294 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00052 Cpe06g00043 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00012 Cpe-Chr2:85595 Cpe06g00043 Cpe-Chr6:227366 2.67E-07 dispersed
Cpe06g00043 Cpe-Chr6:227366 Cpe17g00251 Cpe-Chr17:1660205 7.96E-29 dispersed
Cpe02g00052 Cpe-Chr2:275504 Cpe06g00043 Cpe-Chr6:227366 1.28E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49624 PF01388 ARID 2.50E-18 CL0123 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00043 - - cpep:111797158 555.444