Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00044 ATGAGAACAGTCAGATTCGCCACCTCCATAACGCACAGGCACCTCCGGAGAACAGCGCAGACTGACTCCTTCCCTCCGCTGTACTCCGACGGTGAACGATCCGGTCAATTTTCCCTTAATCACAACTGTGTAGCGATGAAGGAGGACGGAGATGAATCATTGAAGTCCAGCAGTAAAGAAGAGGAGAATGTCGTAGGTTACCACAGCACCAACGTGAAGAAAGTTAGGTTAAATTCAACTCTCACTGCTTTGCTTGACGATCCTATCCTGGCGGATGTCCCCAAGAAGCCCACCTTACTGGACGTTGATACGCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCTGTCCTTAAGCTCGACGGCACCATAATTGATGTGGCGATCATGAATTCCGCATCGTTGAAGGACTTGAAGCTCGCTATCAAGAAGAAAGTAAACGAGATGGAGCAATCCAAGATGGGACATCGCCACATTTCATGGAAGCATGTGTGGGCAAATTTTTGCCTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCTGCGCTTCAGGATTTTGGAATCCGTGCATTTTGTCCCGTATGTCATGTCAAAGAATTCCAGAAGGCATTCTCGAAGGAGAAAACACCGTTTCTTTCACGGTCTCAACAAATGCACATGAACAGACACTTCGGGGGCTGA 687 48.47 MRTVRFATSITHRHLRRTAQTDSFPPLYSDGERSGQFSLNHNCVAMKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTLISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSALQDFGIRAFCPVCHVKEFQKAFSKEKTPFLSRSQQMHMNRHFGG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 229091 232078 - Cp4.1LG06g00550.1 Cpe06g00044 470824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00044 228 CDD Ubl_SNRNP25 113 200 IPR040610 -
Cpe06g00044 228 Pfam Ubiquitin-like domain 114 201 IPR040610 -
Cpe06g00044 228 Gene3D - 108 209 - -
Cpe06g00044 228 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 57 207 - -
Cpe06g00044 228 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 57 207 IPR039690 GO:0000398|GO:0005689
Cpe06g00044 228 SUPERFAMILY Ubiquitin-like 109 198 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00044 K13153 SNRNP25; U11/U12 small nuclear ribonucleoprotein 25 kDa protein - csv:101218865 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01196 Cpe-Chr4:10127483 Cpe06g00044 Cpe-Chr6:229091 2.48E-12 dispersed
Cpe06g00044 Cpe-Chr6:229091 Cpe06g00334 Cpe-Chr6:1848624 3.80E-10 dispersed
Cpe06g00044 Cpe-Chr6:229091 Cpe02g00448 Cpe-Chr2:2530223 7.61E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g150 . Blo12g00870 . Bda03g00303 . Bpe04g00265 Bma04g00267 . . . . Cma09g00080 . . . Cpe06g00044 . . . . . . . . . . . . . . . . . . . Lsi04g01783 Csa04g02673 . . . . . . . . . . Sed01g2460 . Cmo09g00079 . . . . . . Bhi09g02942 Tan01g5062 Cmetu07g1712 . Hepe01g2310 Mch11g0084 . Cla05g01593 Cam05g1701 Cec05g1701 Cco05g1751 Clacu05g1688 Cmu05g1577 Cre05g1694 . . Chy07g00365 Cme07g00084
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010409 1 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 1 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00044 Cpe_Chr06 FPKM 1.430058 1.723835 2.304621 1.312884 3.649574 3.278687 3.939445 4.682954 4.789497 5.039692