Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00051 ATGAAGGATGGAAATCGAGCTCTGACGAACGGCGGCTCTTACGGATCTTCCAGATTCTCCACTCTTTTGGCTTCTGGAGATCGTGACTATCTCGTCTCTTCCACCGGAGCTCAGGTCAAAGTGTCGAATCTCGACGGTAAGGTCCTGGGCCTTTACTTCTCTGCCAACTGGTACCCGCCGTGCCGGAGCTTCAACAAGATTCTGGTCCGAACTTACGAGGAGCTCCAAGAAAATGGGTCGAATTTTGAAGTGGTTTATGTGTCCTCCGACGAGGATTCCGACGCCTTCAATGAGTACCGTGCGAGTATGCCGTGGCCGGCGATTCCATTCTCCGACTTGGAAACCAAAATTGCTTTGAACAGGAAATTCGAGATTGAAGGCATTCCGTGTCTGATTATATTGCAGCCGCGTGAAAATAAAGATGAAACGGCGACGTTGCATGAAGGAGTGGAGGTTGTTTACCGATATGGGGTCGATGCATTTCCTTTTACGAAGGAGAGATTGGAGCAGCTGAAGGATGAGGATAGAGAAAAGGAAGAGAATCAGACATTGTCTACTTTGCTCACAAATGGCAACAGAGATTATCTTTTGGGTTATCCTATCCCGAAACAGGTCCCTGTTGTTTCATTAGTAGGCAAGACCGTGGGGCTCTACTTCTCGGCGAAATGGTGTCTTCCCGGTATGTTCACGCCCAAGCTGATTGCTGTCTACGACAAGATAAAGCAAATGGTAGCAACGAAAGAAAACGAAGATTTCGAGATTGTTTTTGTGTCGAGTGATCGAGACGAGGACTCGTTCAATTCTTACTTCGGTTCGATGCCGTGGCTAGCATTGCCATTTGGAGACCCAATGATTAAAAACCTTGCCAAACATTTTGACGTGCAAGGCATCCCTTGTTTGATAATCTTAGGTCCAAATGGCAAGACAGTCACCAAACAAGGTAGAAACCTAATAAACTTGTACAGGGAAAATGCTTATCCATTCACCGAAGCTAAATTGGAGGAGCTGGTGAAAGAAAAGGAGGAAGAGGCGAAAAACCTCCCGACGTCGGTGCGCCACGTCGGACATAGACACGAGCTGAATTTGGTGTCTGAAGGAAATGGGGGAGGACCGTTCATATGCTGCGAGTGTGACGAGCAGGGTTGTGGATGGGCTTATCAGTGCCTGGATTGTGGATTCGAGGTGCATACAAAGTGCGTCGAGACGAGCAACCACGACTCTCCCTTCCATGGGAGGTGA 1239 48.18 MKDGNRALTNGGSYGSSRFSTLLASGDRDYLVSSTGAQVKVSNLDGKVLGLYFSANWYPPCRSFNKILVRTYEELQENGSNFEVVYVSSDEDSDAFNEYRASMPWPAIPFSDLETKIALNRKFEIEGIPCLIILQPRENKDETATLHEGVEVVYRYGVDAFPFTKERLEQLKDEDREKEENQTLSTLLTNGNRDYLLGYPIPKQVPVVSLVGKTVGLYFSAKWCLPGMFTPKLIAVYDKIKQMVATKENEDFEIVFVSSDRDEDSFNSYFGSMPWLALPFGDPMIKNLAKHFDVQGIPCLIILGPNGKTVTKQGRNLINLYRENAYPFTEAKLEELVKEKEEEAKNLPTSVRHVGHRHELNLVSEGNGGGPFICCECDEQGCGWAYQCLDCGFEVHTKCVETSNHDSPFHGR 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 251154 255753 - Cp4.1LG06g00490.1 Cpe06g00051 470831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00051 412 Pfam C1 domain 356 400 IPR004146 -
Cpe06g00051 412 SUPERFAMILY Thioredoxin-like 31 136 IPR036249 -
Cpe06g00051 412 SUPERFAMILY Cysteine-rich domain 346 401 IPR046349 -
Cpe06g00051 412 SUPERFAMILY Thioredoxin-like 203 312 IPR036249 -
Cpe06g00051 412 PANTHER THIOREDOXIN 17 399 - -
Cpe06g00051 412 Pfam Thioredoxin-like 46 137 IPR012336 -
Cpe06g00051 412 Pfam Thioredoxin-like 212 308 IPR012336 -
Cpe06g00051 412 ProSiteProfiles Thioredoxin domain profile. 173 338 IPR013766 -
Cpe06g00051 412 Gene3D Glutaredoxin 23 165 - -
Cpe06g00051 412 Gene3D Glutaredoxin 201 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00051 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 736.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00051 Cpe-Chr6:251154 Cpe14g00853 Cpe-Chr14:7054411 6.23E-69 dispersed
Cpe06g00051 Cpe-Chr6:251154 Cpe02g00989 Cpe-Chr2:8956773 6.91E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00051 Cpe_Chr06 FPKM 3.765387 4.788396 0.19357 0.136393 0.631914 0.602594 0.668275 0.185 0.152946 0.201216