Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00053 ATGGTTCAAAACTCTCCACAACCGCCGCCACTTGAGGAGCAACAACCACAGAAACCGCCAGAACCATTGCCGAAATCTTCCCAAGATGATGAACTAGACGAAGAGCTACGTAAACTTCTGATTCCCGATGTTAGGGATCTTCCTTTCGCGCCTCCCTCCGCCGTCGAGACCAATTTCGTCTCGTATTTCGCTCCTGGCACGTTCACTGTCGCCGTATCTTTTTCGAATTCACAATGGAATTTTATGAAGGAAGGTCATGATCAGTACGTTTACCGCCATGCCAACGGCTTGTGTGTGATCGGCTTGGCTCCTACGCATATTGCATTCAAAGACAGTAGTGGTATCACAGCTGTTGATTTCAATGTAGGGAAATCTGATCGCAGTAGCTTTAAAGTCACTGGGAAACGCAAGAAGAATGCGCAATTCTTTGAGCCCAATTCTGCTATATGTAAAGTCTGCACCAAAGATGCTTCATATATTGTAAGGTGTTCTGTTAAAGGTTCTCTATTGGAAGTTAATGATCGCTTGATGAAGCAGCCAGAGTTGCTAAAAAATGTGGCTCACAGAGAAGGCTACATTGCTATTGTTATGCCAAAGCCAGGAGATTGGGTGAAAGTTAAGGAGTCATTGCTGAGCCTCGAAGAGTACAAACGATTGAGAGAAGTGTAG 669 44.99 MVQNSPQPPPLEEQQPQKPPEPLPKSSQDDELDEELRKLLIPDVRDLPFAPPSAVETNFVSYFAPGTFTVAVSFSNSQWNFMKEGHDQYVYRHANGLCVIGLAPTHIAFKDSSGITAVDFNVGKSDRSSFKVTGKRKKNAQFFEPNSAICKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLKNVAHREGYIAIVMPKPGDWVKVKESLLSLEEYKRLREV 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 263370 265301 + Cp4.1LG06g00450.1 Cpe06g00053 470833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00053 222 Gene3D - 78 221 - -
Cpe06g00053 222 MobiDBLite consensus disorder prediction 1 33 - -
Cpe06g00053 222 MobiDBLite consensus disorder prediction 9 23 - -
Cpe06g00053 222 PANTHER UNCHARACTERIZED 25 221 IPR039169 -
Cpe06g00053 222 SUPERFAMILY Single hybrid motif 82 220 IPR011053 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00053 - - - cpep:111797363 374.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00053 Cpe13g00653 CST
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1171 . . . . . . . . . . . . . . . Cpe06g00053 Cpe13g00653 Bhi04g00088 . . . . . . . . . . . . . . . . Cone20ag0415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007709 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00053 Cpe_Chr06 FPKM 7.089581 8.668622 30.96179 31.31896 50.384502 51.349991 55.499504 27.187513 25.281382 26.53912