Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00054 ATGCAAACCATTTCTTCTTGGCTCTTCCTTTGGGTTTGTGTCATCTTCTTGCTTCTTTCTGAAAATGCTAAAATAGCTGCTGCTGCAGCTGGGAACAATGGCGTTTATATCGTCTACATGGGATCCGCGTCCAGGACTGACTACCTTCGCCTTCTTACCTCTGTCAACAGGCGGAATGGAAACGCAGTGGTACGGACTTATAAACATGGGTTCACAGGATTCGCAGCTCGTCTGTCAGAGCAGGAAGCCCATGCCATGAGACAAAGGCCTGGAGTTATTTCGGTCTTCCCAGATCCAATACTGAAGCTCCACACAACTCATTCATGGGATTTCTTGGTCAGTCAGACAAGCGTCAAAATCGACAGCGCTCCCAAGGCAGATCCCCCGACCTCTTCCTCTCAGCCGTCCGATACCATTATCGGCATCTTGGACACCGGTATCTGGCCGGAATCCGAGAGTTTTAGAGACGAGGGTATGCCTCCGATACCGTCGAGGTGGAAAGGCACGTGCATGGCTGGCGATGACTTCACTTCCTCCAACTGTAACAGAAAAATCATTGGAGCAAGATTTTACGAAAGTTCTGAGAGCGACGGGATAAGGTTCCACTCACCTCGAGACGGAGCTGGACATGGAACCCACGTGGCTTCAACAGCGGCCGGCAGTGCAGTGGCTAATGCATCCTACTATGGCCTAGCAGCCGGGACGGCCAAGGGCGGCTCCCCCGGCTCAAGGATCGCCATGTATAGAGTCTGTATGGCTGATGGTTGTCATGGATCGTCAATCCTGGCAGCGTTTGATGATGCCATTAACGATGGGGTCGATGTATTATCCTTATCTCTCGGTGTGCCCTACTACTACAAACCGGAATTGACGACCGACCCCATTGCCATCGGAGCCTTTCATGCAGTTGAGAAGGGGATTACAGTTGTCTGCTCTGCTGGAAACGACGGCCCCACTCCGGGATCGGTGGTGAACGACGCGCCGTGGATTCTAACAGTGGCTGCCTCCACCATTGATAGGGATTTTGAGTCTGATGTTGTGCTGGGCAACAAAAAAGTGATCAAGGGAGAAGGTATAAATTTCTCTGCTCTTGAAAGCTCTCCTGTATACCCACTGATACATGGCAAATCGGCCAACAAATCGAGTAGCAGTGAAGACAGTGCGAGGATTTGTTCTGAAGGCTCCATGGACGAAGCTCTTGTGAAGGGGAAGATAGTTATTTGTGAGAGCAGTGAGGAAGGAGGCGGTTCCTATTGGCAAGGTCAGGCTGAAACAGTGGAGAGCCTTGGAGGGGTCGGGGTAGTTCTGATCGATGACCAAACAAAGCTAGTGGCAGAGAAATTTACTTCTCCCATCACCGCTATTAGCTCAAAGGATGGCGATGAGGTCCTTGCCTATGTTCACTCAAGCAGGAACCCAGTTGCTACAATCCTGCCCACCTTGACCGTAATAAACTATAAGCCAGCGCCCGCTATAGCATACTTTTCATCCAGAGGGCCCAATCCCGCAGTATTAAACATGATCAAGCCGGACATATCAGCACCAGGAGTGAACATTCTTGCAGCCTGGCTTGGAAATGACACAAATTCTACTCCACAACCAGAAAATTCGCCGCTCTTCAATGTGATCTCAGGAACTTCAATGTCCTGCCCGCATGTCTCCGGCGTAGTGGCCATGGTAAAATCTAAAAACCCCACATGGACAATCCAAACGAATAACTTAGAATCGCCGATGACTTTGGATACGGGATCAGTAGCTACACCTTATGATTATGGGGCAGGAGAGATATCAACCACCGGAGCATTAAAACCAGGACTAGTCTATGAAACTAGTACAACTGACTACTTAATCTACCTTTGTGGCCGAGGCTATAACCGGTCCACCATAAAGAGCATCTCAAATACTGTTCCTGATGGGTTTGATTGCCCCAAGGATTCTAATGCAGACTACATATCCAACATGAACTACCCAACAATAGCAGTGTCCGAATTGAAAGGCAGCGAAAGCAAGAAAATAGTGAGAACAGTTACAAATGTTGGTGGTGATGGTGCAACAGTTTACAAAGTCAGTGTGGACGCACCTGGGGAAGTAGATGTCAAGGTGATTCCAGAGAAATTGGAATTTTCAAAGAACAACCAGAAGCAGAGTTACAAAGTGGTGTTCACCTCAACTGTGTCCACACTGAAGAAAGAAGCCTTTGGCTCAATAACTTGGAGCAATGGAAAACATCGAGTCCGGAGTCCATTTGTCGTAACCAGTGAGAGTAGTAGGTCAGAAGATTAG 2283 48.71 MQTISSWLFLWVCVIFLLLSENAKIAAAAAGNNGVYIVYMGSASRTDYLRLLTSVNRRNGNAVVRTYKHGFTGFAARLSEQEAHAMRQRPGVISVFPDPILKLHTTHSWDFLVSQTSVKIDSAPKADPPTSSSQPSDTIIGILDTGIWPESESFRDEGMPPIPSRWKGTCMAGDDFTSSNCNRKIIGARFYESSESDGIRFHSPRDGAGHGTHVASTAAGSAVANASYYGLAAGTAKGGSPGSRIAMYRVCMADGCHGSSILAAFDDAINDGVDVLSLSLGVPYYYKPELTTDPIAIGAFHAVEKGITVVCSAGNDGPTPGSVVNDAPWILTVAASTIDRDFESDVVLGNKKVIKGEGINFSALESSPVYPLIHGKSANKSSSSEDSARICSEGSMDEALVKGKIVICESSEEGGGSYWQGQAETVESLGGVGVVLIDDQTKLVAEKFTSPITAISSKDGDEVLAYVHSSRNPVATILPTLTVINYKPAPAIAYFSSRGPNPAVLNMIKPDISAPGVNILAAWLGNDTNSTPQPENSPLFNVISGTSMSCPHVSGVVAMVKSKNPTWTIQTNNLESPMTLDTGSVATPYDYGAGEISTTGALKPGLVYETSTTDYLIYLCGRGYNRSTIKSISNTVPDGFDCPKDSNADYISNMNYPTIAVSELKGSESKKIVRTVTNVGGDGATVYKVSVDAPGEVDVKVIPEKLEFSKNNQKQSYKVVFTSTVSTLKKEAFGSITWSNGKHRVRSPFVVTSESSRSED 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 275921 279755 + Cp4.1LG06g00390.1 Cpe06g00054 470834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00054 760 SUPERFAMILY Subtilisin-like 133 606 IPR036852 GO:0004252|GO:0006508
Cpe06g00054 760 CDD Peptidases_S8_3 101 568 IPR034197 -
Cpe06g00054 760 Gene3D Peptidase S8/S53 domain 137 615 IPR036852 GO:0004252|GO:0006508
Cpe06g00054 760 Gene3D - 339 484 - -
Cpe06g00054 760 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 41 753 IPR045051 -
Cpe06g00054 760 SUPERFAMILY Protease propeptides/inhibitors 35 102 - -
Cpe06g00054 760 ProSiteProfiles Serine proteases, subtilase domain profile. 108 602 - -
Cpe06g00054 760 Pfam Fibronectin type-III domain 653 751 IPR041469 -
Cpe06g00054 760 Pfam Subtilase family 136 570 IPR000209 GO:0006508|GO:0008236
Cpe06g00054 760 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.1 41 753 - -
Cpe06g00054 760 Pfam Peptidase inhibitor I9 35 104 IPR010259 -
Cpe06g00054 760 ProSitePatterns Serine proteases, subtilase family, serine active site. 545 555 IPR023828 -
Cpe06g00054 760 ProSitePatterns Serine proteases, subtilase family, histidine active site. 210 220 IPR022398 -
Cpe06g00054 760 Gene3D - 619 754 - -
Cpe06g00054 760 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 104 IPR037045 -
Cpe06g00054 760 PRINTS Subtilisin serine protease family (S8) signature 135 154 IPR015500 -
Cpe06g00054 760 PRINTS Subtilisin serine protease family (S8) signature 544 560 IPR015500 -
Cpe06g00054 760 PRINTS Subtilisin serine protease family (S8) signature 206 219 IPR015500 -
Cpe06g00054 760 CDD PA_subtilisin_like 345 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00054 Cpe-Chr6:275921 Cpe12g00580 Cpe-Chr12:5872029 3.08E-176 dispersed
Cpe11g00406 Cpe-Chr11:2248325 Cpe06g00054 Cpe-Chr6:275921 0 transposed
Cpe16g00312 Cpe-Chr16:4999551 Cpe06g00054 Cpe-Chr6:275921 3.20E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00054 K25898 - csv:101213415 1225.69