Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00055 ATGCAGAACGGAGATTACGGTACAGCTCCGTATTTCCAATACCAAAATTTTCAAAACCTTACCCTTAATCCTAGCCCTAATCCAGTTCCGATTCCCCCCGATCGCAACCAGAGCGCTTATGCCTCGGCGCCGCCCTTCTCCACCAATTATGGTGCCTCCGATTACCCTGGCTATGCCCCTTATTATCCCCCCTATTCCCAGAATCCCGATCCCCTCCCTGCCTCTCCGACTGCGCCTCTTTTCAACTCTCCCTCATCCAATTCTAGTCCCCAGACATTCAATCCCACTCCTCAATCACCCGCTTTCCCTCCATTTGAGTCTCATGTGCCTTATCAACCTCCTTCTCAGTCGCAATCGTATCACTCAACCTACGATCAGCATCAGGCGGCTCCCAATTGTGCTCCCCCTCCACCGTCCTCAATTCCCATGAATCAGAGCTCTAATTCTACCCCTACTGCTAATTCTCCGTTCTCATCCATGTATTCGGCTCCCTTTGGCTCTTTGGCACCCCCGTCGTATGAAAATCCATATGAAAGTTCGGTTAAATTTGATCAGGGAGGCGGATATGCTGATGATAGATATGGAGGTTACGGTCGAAGTCGGTCTGATTTTGGTTCGGAGTTGTACGGAAAGCGGCCGGAGGACGCGGCACCGCGCTTCGACTCTGGCTATGATGACGGTTATGGCGATGGAGTCTATGCTTACCAAGGTGGCAAAGTTGAGCCTTATGGTGCTCGTGGTACGGCTTCTAAGTCTTCGACGTGGTCTGCCGCGACGCCTGCTTTTGACGATTATGGGAGGCCGATAAATATTCCTCCGAAAAAAGATCCTCCGGCGAGTTCACTGAAAGTAGTTAGGGCGATCCCTAAGGTGGAAGCTCAAGAAGACGTCAAAAATTGGGTGCAGAAGTTCCGGGTGAAGCTTTTGGCTGAAAGTGGAGGTCAGAGCACCATGGATGTACTTTGTCAGGTTGGTCTAGATGGCATTCGTATGCTTGATCCGAATTCTAGTCGAACGTTAAGGATATATCCTCTTGAGACCATCACTAGATGTGAAGTGTATGATTCTTCTACCCTGGCTTTCTGGTCCAAGAGCTCTGTGGATATTGAGCCACGGCGTATTAGATTACAGTCAAACAAGTACACCACCAACACGCTTCTGGACACGGTGACTGCTGCAACTGTACAGTTTAAGGAAATGGGTGGAAGAAGTAGGCCTTCTGAATCTTTTAAGGCGCCTGAGCAGCCTACAGAGAAGAAGAAAGGGTTGGTTGATTGGGTGAACCTGATAAAGCCAGGCAACGAGGAGAAAGATCATTGGGTACCTGATGAAGCAGTCACGAAGTGTACAGCCTGTGGGTCAGACTTTGGGGCTTTTGTCCGAAGGCATCACTGCAGAAATTGTGGAGACATCTTCTGTGATAAATGTACGCAAGGTAGAACAGCTCTGACTGCTGAGGAGAATGCTCCTCAAGTTCGAGTTTGTGACAGATGCATGGCGGAAGTGACTCAGAGGCTCGCTAATGCGAAGGATCTGACTAGTAATCCTGTAGGGTTGCATAGCCATGAGGATCTTGCCAAAAAACTTAAGGATGAAATGGAGAGAAACCGTAGGTCATCAGGATCCAAGTCTGATGGATCTGGGAAACGTATGAAGGAAGTTGCATGTCCTACTTGTACTGTGCACTTACAGGTGCAGGTTCCAAGCTCAGGTTCCGAGACCATTGAGTGTGGGGTTTGCCAGCATCCATTCCTTGTCAGCGCTCACTGA 1770 49.38 MQNGDYGTAPYFQYQNFQNLTLNPSPNPVPIPPDRNQSAYASAPPFSTNYGASDYPGYAPYYPPYSQNPDPLPASPTAPLFNSPSSNSSPQTFNPTPQSPAFPPFESHVPYQPPSQSQSYHSTYDQHQAAPNCAPPPPSSIPMNQSSNSTPTANSPFSSMYSAPFGSLAPPSYENPYESSVKFDQGGGYADDRYGGYGRSRSDFGSELYGKRPEDAAPRFDSGYDDGYGDGVYAYQGGKVEPYGARGTASKSSTWSAATPAFDDYGRPINIPPKKDPPASSLKVVRAIPKVEAQEDVKNWVQKFRVKLLAESGGQSTMDVLCQVGLDGIRMLDPNSSRTLRIYPLETITRCEVYDSSTLAFWSKSSVDIEPRRIRLQSNKYTTNTLLDTVTAATVQFKEMGGRSRPSESFKAPEQPTEKKKGLVDWVNLIKPGNEEKDHWVPDEAVTKCTACGSDFGAFVRRHHCRNCGDIFCDKCTQGRTALTAEENAPQVRVCDRCMAEVTQRLANAKDLTSNPVGLHSHEDLAKKLKDEMERNRRSSGSKSDGSGKRMKEVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 280661 285356 - Cp4.1LG06g00520.1 Cpe06g00055 470835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00055 589 MobiDBLite consensus disorder prediction 111 129 - -
Cpe06g00055 589 PANTHER PROTEIN FREE1 1 589 - -
Cpe06g00055 589 MobiDBLite consensus disorder prediction 79 95 - -
Cpe06g00055 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 508 IPR013083 -
Cpe06g00055 589 MobiDBLite consensus disorder prediction 96 110 - -
Cpe06g00055 589 PANTHER PROTEIN FREE1 1 589 IPR045893 GO:0036258|GO:0043130
Cpe06g00055 589 MobiDBLite consensus disorder prediction 529 550 - -
Cpe06g00055 589 CDD FYVE_EEA1 440 502 - -
Cpe06g00055 589 SMART fyve_4 435 504 IPR000306 GO:0046872
Cpe06g00055 589 MobiDBLite consensus disorder prediction 62 78 - -
Cpe06g00055 589 MobiDBLite consensus disorder prediction 17 195 - -
Cpe06g00055 589 Pfam FYVE zinc finger 439 503 IPR000306 GO:0046872
Cpe06g00055 589 MobiDBLite consensus disorder prediction 143 162 - -
Cpe06g00055 589 SUPERFAMILY FYVE/PHD zinc finger 438 514 IPR011011 -
Cpe06g00055 589 Coils Coil 519 539 - -
Cpe06g00055 589 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 443 503 IPR017455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00055 - - - csv:101213650 1002.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00061 Cpe06g00055 CCT
Cpe02g00061 Cpe06g00055 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00055 Cpe-Chr6:280661 Cpe12g00552 Cpe-Chr12:5632828 3.72E-11 dispersed
Cpe10g00805 Cpe-Chr10:4566364 Cpe06g00055 Cpe-Chr6:280661 2.94E-11 transposed
Cpe02g00061 Cpe-Chr2:314506 Cpe06g00055 Cpe-Chr6:280661 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00055 Cpe_Chr06 FPKM 73.904137 82.671799 8.509111 8.554389 8.946169 10.857256 12.225957 5.799086 4.652013 4.409372