Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00058 ATGATAACAAGAAACGCAGTGGGGATGAGGAAAAAATCGCTCCATCCTGTTCTTTCCCACTTGTTTATCCTCGTTTTACTTCTGTTCTCTGCCAGTTTTTGTTTCGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCATGATCGGACCCGGGAGGTCGGCGCTTGATGATTGGGAGCCGTCGTCGTCCCCGTCTGCTCATTGCGATTTCTCCGGCGTTACGTGTGACGGCGATCACAGAGTTGTTGCGCTTAACGTCTCGAATTTTCGTTTATTCGGCCCGATTCCGCCAGAGATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTGACAATCTCACCGGAGGACTTCCTCTCGAATTGGCAAAACTCACATCGCTTAAGATTCTGAACCTATCTAACAACGCATTTCATGATAAGTTGCCGGCTGAAATCACGCTTGGAATGACCGAACTCGAGGTTTTTGATGTCTATAACAACAATTTCTCCGGTCCGCTCCCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGTGGATGTTACTTCACTGCTCAGATTCCTTCTGTTTACTCGGAGATGCAGACGTTGGAGTTCTTAAGCGTGCGGGGAAATGCGCTTACCGGAAGTATTCCAGCGAGTTTGGCGCGGCTGAAGAATCTTAGGTATCTTTACGCCGGATATTTTAACCATTACGACGGCGGGATTCCGGCCGAGTTCGGATCGTTGAGTTCTCTTGAGCTTCTCGATTTAGCAAACTGTAACCTCTCCGGTGAGATTCCTCCGAGTATGGGGAATTTAAAGCACCTGCATAGTCTATTTCTACAAGTTAACAATATAACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCACTGGACCTCTCACTGAACGAACTCACCGGAGAGATACCGTCGAGTTTCGTGGTACTGCAGAACCTCACGCTGATCAATTTGTTCAACAACAAGCTTCACGGTCCAATCCCTGGTTTCATAGGTGATTTTCCACATCTTGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTGGAGCTCCCCGAGAATCTAGGGCGTAACGGAAAACTTTTTCTGCTCGACGTAGCGACAAATCATCTAACTGGACTCATTCCTCCGGATTTATGTAATGGTAGGTTGAAGACTTTGATTCTGTTGGATAATTACTTCTATGGGCCCATCCCTGAGAAATTAGGCCGATGTGATTCACTTACGAAAATAAGAATTGCGGGAAATTTCTTCAACGGAACGGTTCCGGCAGGGTTCTTCAACTTCCCGGCGTTGGAGCTACTTGATATCAGTAATAATTACTTCTCTGGCGCTCTTCCGTCGCAAATGTCTGGCGAGTTTCTTGGAACTCTGCAGCTTAGTAACAACCATATTACCGGGGAAATCCCCGCCGCTATTAAGAATTTAGAAAACTTGCAGGTTGTTTCTCTGGAATATAACCAATTCACTGGGCATTTGCCCGTGGAAATATTTGAATTGAACAAGTTGCTGAGGATTAACATCAGCTTTAACGATATTAGCGGCGAAATTCCGCATTCAGTTGTTCAGTGCTCGTCTTTAACGTCAATCGATCTCAGTGAAAATCATCTCGTCGGCCAAATTCCCAGGGGATTGTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCAAGAAATCAAGTGTCGGGCCAAATTCCTGACGAGATTCGGTCGATGATGAGTCTTACAGTTCTTGATTTGTCATACAATAACTTCTTCGGTAGAATCCCCACAGGCGGTCAGTTTTCGGTATTCAATGGCAGCGCCTTCGCCGGAAACCCTAACCTCTGCTTCCCCAGCCACGGATCTTGCGGATCTCTACACAAGAATTCGAAATCTGTTAAGCTAATCATTTCAATCGTCGCGATATTCACCGTTCTATTATGCGTATTCGTCGCAGTTTATCTCAGAAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTCAATTTTAAAGCGGAGGACGTCCTCGAGTGTTTGAAGGAGGAGAATATCATCGGAAAAGGCGGCGCTGGCGTCGTCTACCAATACGCGTACACACTGAAAGTGGACGAGAAGAGCGATGTGTACAGTTTCGGTGTGGTGCTGCTGGAGCTGATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTGAGGTGGGTCCTCAAAACCTCATCAGAACTCTCTCAACCGTCCGATGCTGCCTCAGTATTAGCCGTGGTGGACTCTCGCCTCGCCGAATACCCTCTCCAAGACGTAATCCACCTCTTCAAAATAGCCATGATGTGCGTGGAAGAAGACAGCTCTGCAAGGCCAACCATGAGGGAGGTTGTTCACATGCTCTCAAATCCCCCAAGGTCTGTCCCTGTTCTCATCAACCTCTAA 2478 47.3 MITRNAVGMRKKSLHPVLSHLFILVLLLFSASFCFANRDMEALLKMKSAMIGPGRSALDDWEPSSSPSAHCDFSGVTCDGDHRVVALNVSNFRLFGPIPPEIGMLEKIENLTLVSDNLTGGLPLELAKLTSLKILNLSNNAFHDKLPAEITLGMTELEVFDVYNNNFSGPLPVEFVKLKKLKHLDLGGCYFTAQIPSVYSEMQTLEFLSVRGNALTGSIPASLARLKNLRYLYAGYFNHYDGGIPAEFGSLSSLELLDLANCNLSGEIPPSMGNLKHLHSLFLQVNNITGRIPPELSGLISLKSLDLSLNELTGEIPSSFVVLQNLTLINLFNNKLHGPIPGFIGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFYGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGEFLGTLQLSNNHITGEIPAAIKNLENLQVVSLEYNQFTGHLPVEIFELNKLLRINISFNDISGEIPHSVVQCSSLTSIDLSENHLVGQIPRGLSKLKILSVLNLSRNQVSGQIPDEIRSMMSLTVLDLSYNNFFGRIPTGGQFSVFNGSAFAGNPNLCFPSHGSCGSLHKNSKSVKLIISIVAIFTVLLCVFVAVYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEENIIGKGGAGVVYQYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTSSELSQPSDAASVLAVVDSRLAEYPLQDVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSVPVLINL 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 303308 306800 + Cp4.1LG06g00590.1 Cpe06g00058 470838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00058 825 SMART LRR_typ_2 129 153 IPR003591 -
Cpe06g00058 825 SMART LRR_typ_2 489 513 IPR003591 -
Cpe06g00058 825 SMART LRR_typ_2 251 275 IPR003591 -
Cpe06g00058 825 SMART LRR_typ_2 561 585 IPR003591 -
Cpe06g00058 825 SMART LRR_typ_2 347 371 IPR003591 -
Cpe06g00058 825 SMART LRR_typ_2 299 323 IPR003591 -
Cpe06g00058 825 Gene3D Ribonuclease Inhibitor 395 631 IPR032675 -
Cpe06g00058 825 SUPERFAMILY L domain-like 78 392 - -
Cpe06g00058 825 PANTHER UNNAMED PRODUCT 20 709 - -
Cpe06g00058 825 PANTHER UNNAMED PRODUCT 709 819 - -
Cpe06g00058 825 Pfam Leucine Rich repeat 301 315 IPR001611 GO:0005515
Cpe06g00058 825 Pfam Protein tyrosine and serine/threonine kinase 715 812 IPR001245 GO:0004672|GO:0006468
Cpe06g00058 825 Gene3D Transferase(Phosphotransferase) domain 1 706 818 - -
Cpe06g00058 825 Gene3D Ribonuclease Inhibitor 238 394 IPR032675 -
Cpe06g00058 825 Gene3D Ribonuclease Inhibitor 153 237 IPR032675 -
Cpe06g00058 825 Gene3D Ribonuclease Inhibitor 38 152 IPR032675 -
Cpe06g00058 825 SUPERFAMILY L domain-like 396 626 - -
Cpe06g00058 825 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515
Cpe06g00058 825 Pfam Leucine rich repeat 131 189 IPR001611 GO:0005515
Cpe06g00058 825 Pfam Leucine rich repeat 470 526 IPR001611 GO:0005515
Cpe06g00058 825 Pfam Leucine rich repeat N-terminal domain 36 79 IPR013210 -
Cpe06g00058 825 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 20 709 - -
Cpe06g00058 825 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 709 819 - -
Cpe06g00058 825 Pfam Leucine Rich Repeat 253 275 IPR001611 GO:0005515
Cpe06g00058 825 SUPERFAMILY Protein kinase-like (PK-like) 711 813 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00064 Cpe06g00058 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00058 Cpe-Chr6:303308 Cpe10g00515 Cpe-Chr10:3024430 0 dispersed
Cpe15g00410 Cpe-Chr15:5252990 Cpe06g00058 Cpe-Chr6:303308 1.88E-132 dispersed
Cpe02g00064 Cpe-Chr2:333563 Cpe06g00058 Cpe-Chr6:303308 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62456 PF07714 PK_Tyr_Ser-Thr 8.90E-07 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00058 K00924 - csv:101221360 1206.82