Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00079 ATGAGCTCTGTGGAAGACAAGCTCAAGACACCAATGGGTTTGGTTAACAACACCCCTCAGACTAACCTTCTCGACGAGATGAAGTTGCTGAAACAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATTAACTCCGAGCTCTGGCACGCGTGTGCTGGTCCGCTTGTTTCCTTGCCCCATGTGGGGAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCGGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAGTGTTACCTTACATGCTGATAAAGATTCAGATGAAATCTACGCTCAAATGAGCCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCCTTGTTCCGGACTTTGGACTACGGCCGAGTAAACACCCAAATGAATTCTTCTGCAAAACATTGACTGCCAGTGATACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAGCTTTTTCCGCCATTGGATTACACAATGCAACCACCAACTCAGGAGCTCGTTGTTCGAGACTTGCATGACAATACCTGGACTTTTCGCCACATCTATCGCGGTGAGGATGAAAAGTCCCAGTTGCTGATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCGGTGCTATCCGCCGACAGTATGCATATAGGAGTTCTTGCTGCTGCAGCTCATGCCGCTGCTAATCGCAGTCCATTCACAATCTTTTACAATCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAATATCGGAAATGTGTATTCGGAACTCAGCTTTCTGCGGGTATGAGGTTCGGGATGATGTTTGAAACAGAGGAGTCGGGAAAACGCCGATATATGGGTACAATTGTTGGGATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAAGTGGAATGGGATGAGCCAGGGTGCTGCGACAAGCAAAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGTCCATTACACGGCGGATTTTTGGGAGAAACTGATTGGGAAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGAGGGGATCTTTCATATGCTGCGCCAAATCTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAACTCGTTAGCCTTCACGGAGCCACCTTACACCAGGATTCAGCTAACAATTTAGTGAAGATACAGGACATGAAGGACATGCAGCCAGAAACCAATTCTAAAATGAAGCAGCCTATTCCGACAGAAACTGCATCTCCCGGGAATCAAAATCCTGATCCCATAAACCCAAATTCATCACCAAAAGAAAGTTTACCAGGAAAAGTGCACACTTCAGCGGCTACTGAAAGTGAACCTCCAACTGGAGCTGATGATGTTTCAACCAATCAGTCCAATACATTGCCCCCGGTCGGAGATTGTGTGGGGGGAAAACTCAGTGCTAAAGAAGTGAATATGCAGACCCTTGTGAACCAGCTTTCATTTATGAACCAGAATCAGATCCCCATGCAGTCATGGCCGTTGCAGCCTCAGCTTGAATCACTAATCCAACACCCACAACCAATTGACATGCCTCAGCCTGAATTTACGCTGGATGGTGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCCGGGAACCTTTCCATGTTGGCATTGCAAGAATCCTCAACAGTCTTCCCTGAGGCTCTTAATTTTCCCTTACCCTCAACTGGGCAAGACATGTGGGATCCTCTTAATAATATAAGATTCTCTTCTAACCTGAATTGTATGGGTAATGCAAATGTTATGAGAGCCGTTTCAGACGAGAGCAACAACCAAAGTGGGATATATAGCTGTTCTAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGATCCTGCTGTTTCGAGTACTATTCTTGATGATTATTGCGCATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGTTGGAAACTTCAGCTCAAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTGCTAGTCTTGGAGATTCTCAGGCTTTCTCCAGGCAAGACTTCCATGATAATTCAGGTGGTACTTCCTCTTGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCATAACGGCTCCTGGAATCAAGTCGTACCGCCCATGAGAACTTACACCAAGGTCCAGAAGGCAGGATCTGTTGGGAGGTCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCCGCTATCGAATGCATGTTTGGACTTGAAGGGCTGCTTAATGACCCGAGAGGCTCAGGATGGAAACTGGTTTATGTCGATTATGAGAATGACGTCTTGCTTATTGGCGATGATCCATGGGAGGAATTTGTGAGCTGTGTACGGTGCATCAGAATCTTGTCGCCCTCAGAAGTTAAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATGCCAGAAGGTGGCCGAGGTTAA 2643 46.12 MSSVEDKLKTPMGLVNNTPQTNLLDEMKLLKQMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQSVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGEDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWESLVKRPMLRVPENIRGDLSYAAPNLCSEPLMKMLLRPQLVSLHGATLHQDSANNLVKIQDMKDMQPETNSKMKQPIPTETASPGNQNPDPINPNSSPKESLPGKVHTSAATESEPPTGADDVSTNQSNTLPPVGDCVGGKLSAKEVNMQTLVNQLSFMNQNQIPMQSWPLQPQLESLIQHPQPIDMPQPEFTLDGDGCLINPSCLPLPGVMRSPGNLSMLALQESSTVFPEALNFPLPSTGQDMWDPLNNIRFSSNLNCMGNANVMRAVSDESNNQSGIYSCSNLEISNGGNTLVDPAVSSTILDDYCALKDADFPHPSDCLVGNFSSSQDVQSQITSAASLGDSQAFSRQDFHDNSGGTSSCNVDFDEGSLLHNGSWNQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVKQMSEEGMKLLNSAMMQGINCSMPEGGRG 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 395016 400244 + Cp4.1LG06g00800.1 Cpe06g00079 470859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00079 880 SUPERFAMILY CAD & PB1 domains 766 845 - -
Cpe06g00079 880 Gene3D - 284 356 - -
Cpe06g00079 880 Gene3D - 763 855 - -
Cpe06g00079 880 Pfam Auxin response factor 246 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe06g00079 880 MobiDBLite consensus disorder prediction 447 516 - -
Cpe06g00079 880 Gene3D - 147 226 IPR015300 -
Cpe06g00079 880 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 870 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe06g00079 880 Pfam AUX/IAA family 767 853 IPR033389 -
Cpe06g00079 880 PANTHER AUXIN RESPONSE FACTOR 5 30 870 - -
Cpe06g00079 880 SUPERFAMILY DNA-binding pseudobarrel domain 136 249 IPR015300 -
Cpe06g00079 880 CDD B3_DNA 148 211 IPR003340 GO:0003677
Cpe06g00079 880 MobiDBLite consensus disorder prediction 447 512 - -
Cpe06g00079 880 ProSiteProfiles PB1 domain profile. 766 850 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00083 Cpe06g00079 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00079 Cpe-Chr6:395016 Cpe11g01202 Cpe-Chr11:9801668 1.69E-20 dispersed
Cpe02g00083 Cpe-Chr2:423119 Cpe06g00079 Cpe-Chr6:395016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49625 PF02309 AUX_IAA 9.20E-10 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00079 K14486 - csv:101216825 1593.17