Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00083 ATGTCGACGAGAGGGAGCAGATCGGAGAAGGTGAACAGGATATTTCAGAAATTTGACGCTAACCATGATGGGGGTCTCAATAGGGACGAAATGGCTGCGCTTGTCGTGGCTGTTAACCCTAGGGTCAAATTCAGCGATGAACAGATCAATGCGATTCTTGACGAGGTGTTTCGGACGTACGGGAATTTTATTCAGGGCGATGAGGGTCTAACTTTTGAGGGGTTGTTGAGGACTTATGATGATGGCGCTGGAGATGTGGACCGTGACTTCGACGCGCTTGAATTGGATATTAATAATAAGGGAATTCTGGTGACTTCAGAGGCTTCCTCTTCTTCAATTGCCGACGAGCGTGCTTTGGAGTCCCAGAAGAAGCAGAGAACTGCAGCGTGGGCATTGTCGCCGAATCATGGCATTGTGTTTGATGATAGTTGGAAGATCGTCGATGATTTGGAGATTTTAATCAAAAGATTGAAGGCCAAGCAGGCTAAGGATGGGAAATTGAAGGCGGACAATTTGGATGCCCACTCTGATGCAGGCTGGTCCAGAGAATTAGGGCCGTCTTCGGAGCTTTCAGAGAAGAGGGTTTTCTGGGAAGAGTCCGGCCATGACTATGCTTCCTTTCTCAAGGAATTAGAGGCGTTGAGAACTCGAGCAGATCGAGCGCGATCCAGAGATGAGGCTTTTGATGGGCATATGGTAATTGGTAGGGTTTTGTATGAGCACCAGCTGTTTAAGGAGGCTCTGGTTAGCTTCAACCGGGCTTGTGAACTGCTACCTACCGACGTGAAGCCGCATTTTAGAGCTGGGAATTGCTTCTATGTTCTTGGAAAGTATAAGGAGGCCAAGGAAGAGTTTCTGTTGGCAGTGGAAGCGGCGGAGGCCGGCGGAAATCAGTGGGGATATTTGCTTCCACAGATTTATGTGAACCTTGGAATTGCACTTGAAGGTGAAGGCTCAGGAAGGGTGGACTTGGGGCTGTTTTTTGCCGTTCTTGCTCCCATTTGCAATGGCCCCCCTGAAACGAGAAAGCGGGTGGCATACGACGCCCTTGTATGGCGACACGTAAACGAGGGCGGTACTCAGATTAGAAAACTTGATGCAGTTAAGTATATCAAATTGTTGAGGGCTATATATGTTCCTATAGAAGGATCGAGCGAAATTGTGGAAGTCCATGGCCACACCGACAATTCTATCGTGTCTTTCACAGAGTTTCTCGTCATGTTTGATGACCCAGACCGGGGTTTTGGTATCATGTCCACCATGCTAAAGCTAGAAACAGGGGACAGAAATCGTCATGGAAATCACGTATGCTCGGTTTGCCGCTATCCTATCATTGGTTCTCGATTCAAGGAGATGAAATCACATTTTAGCTTGTGTAATCAGTGCTATAGCGAGGGGAAGGTGCCCCCTTCATGCAAGCAAGAAGCATACAGATTTAAAGAGTATGGGAGTGAGGGTGAAGCAGTTAAAGACAAATGTTTCTGCTTTGCAATGCAATCTCATGACGATTCTTAG 1515 47.46 MSTRGSRSEKVNRIFQKFDANHDGGLNRDEMAALVVAVNPRVKFSDEQINAILDEVFRTYGNFIQGDEGLTFEGLLRTYDDGAGDVDRDFDALELDINNKGILVTSEASSSSIADERALESQKKQRTAAWALSPNHGIVFDDSWKIVDDLEILIKRLKAKQAKDGKLKADNLDAHSDAGWSRELGPSSELSEKRVFWEESGHDYASFLKELEALRTRADRARSRDEAFDGHMVIGRVLYEHQLFKEALVSFNRACELLPTDVKPHFRAGNCFYVLGKYKEAKEEFLLAVEAAEAGGNQWGYLLPQIYVNLGIALEGEGSGRVDLGLFFAVLAPICNGPPETRKRVAYDALVWRHVNEGGTQIRKLDAVKYIKLLRAIYVPIEGSSEIVEVHGHTDNSIVSFTEFLVMFDDPDRGFGIMSTMLKLETGDRNRHGNHVCSVCRYPIIGSRFKEMKSHFSLCNQCYSEGKVPPSCKQEAYRFKEYGSEGEAVKDKCFCFAMQSHDDS 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 412245 414632 + Cp4.1LG06g00840.1 Cpe06g00083 470863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00083 504 Coils Coil 204 224 - -
Cpe06g00083 504 SUPERFAMILY EF-hand 4 88 IPR011992 -
Cpe06g00083 504 Gene3D Tetratricopeptide repeat domain 153 331 IPR011990 GO:0005515
Cpe06g00083 504 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Cpe06g00083 504 PANTHER EF HAND FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 318 501 - -
Cpe06g00083 504 PANTHER EF HAND FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 318 - -
Cpe06g00083 504 SMART tpr_5 228 261 IPR019734 GO:0005515
Cpe06g00083 504 SMART tpr_5 262 295 IPR019734 GO:0005515
Cpe06g00083 504 Gene3D - 1 81 - -
Cpe06g00083 504 PANTHER EF HAND FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 318 501 - -
Cpe06g00083 504 PANTHER EF HAND FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 318 - -
Cpe06g00083 504 SUPERFAMILY TPR-like 229 293 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00083 - - - csv:101213441 567.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00091 Cpe06g00083 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00091 Cpe-Chr2:464375 Cpe06g00083 Cpe-Chr6:412245 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1045 Blo01g01584 Blo12g00896 Bda01g00505 Bda03g00276 . Bpe04g00231 . Bma01g02349 . . Cma01g01948 Cma09g00123 Car01g01522 . . Cpe06g00083 . . . . . . . . . . . . . . . Cone4ag1950 Cone7ag1862 Cone17ag1381 Cone20ag0101 Lsi04g01718 . . . . . . . . . . . . Cmo01g02008 Cmo09g00121 . . . Car09g00109 . Cpe02g00091 . . . . . . . Cla05g01897 Cam05g2033 Cec05g2042 Cco05g2098 Clacu05g2025 Cmu05g1905 Cre05g2028 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006503 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00083 Cpe_Chr06 FPKM 9.768497 10.825168 10.898551 11.056762 23.512115 28.700272 23.603067 19.569567 19.308758 17.414024