Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00084 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCTACGAACAGGCAGGTCACCTACTCCAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTCCTCTGCGATGCCAAAGTCTCCATCATCATGTTTTCCAGCACTGGAAAACTCCACGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTCTAGGCGTTGATCTATGGATCTCTCACTACCAGGTCTCCCACTCCCCCCCTTCTTTTCTTCTCTCATCACTCTTCTATATACCCTATCAATTCGGCCATGTGCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGACGTGAATCGTAGCCTTCGCAGGCAGATTATGCAAAGGATGGGGGAATGCATGAATGATCTGAGTTTTGAGGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCCGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGCGTAGGAGAAATACACAAGAGTCTTCTTCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTGGACAATGGAGGTGTCGGAGTCGGAGTAGGAGTCGGAGTAGGAGTAGGCGTAGGAGTAGGCGGAGGAGATTATGAGTCAGTTATGGGATAA 705 48.65 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKELFDQYQKTLGVDLWISHYQVSHSPPSFLLSSLFYIPYQFGHVQRMQENLKKLKDVNRSLRRQIMQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGVGVGVGVGVGVGGGDYESVMG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 415818 418298 - Cp4.1LG06g00970.1 Cpe06g00084 470864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00084 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 85 - -
Cpe06g00084 234 Pfam K-box region 107 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe06g00084 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cpe06g00084 234 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Cpe06g00084 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 107 209 - -
Cpe06g00084 234 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Cpe06g00084 234 Coils Coil 108 128 - -
Cpe06g00084 234 PANTHER APETALA3 1 85 - -
Cpe06g00084 234 PANTHER APETALA3 107 209 - -
Cpe06g00084 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe06g00084 234 ProSiteProfiles K-box domain profile. 108 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00096 Cpe06g00084 CCT
Cpe02g00096 Cpe06g00084 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00084 Cpe-Chr6:415818 Cpe06g00605 Cpe-Chr6:3725574 1.04E-35 dispersed
Cpe02g00096 Cpe-Chr2:486669 Cpe06g00084 Cpe-Chr6:415818 2.69E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49626 PF01486 K-box 4.50E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00084 K09264 - csv:101218008 356.681