Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00087 ATGGACGTCGATCCTCCTCTCTACGACCTCATCGCTATCAATGATGGTGATATTCAGAACATTGTTCTATCGTACCTTGTTCATAACTGTTATAAAGAAACTGCAGAGTCGTTCGCTAATTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTCACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAAGCCATTGAGTTAACAGAAGAGTTAGCACAGGGTTTACTTGAGAATAATGAGGACCTGCATTTTGATCTTTTAAGCCTTCATTTTGTTGAACTTGTATGCTCTAGGAAATGCACAATGGCCCTGGAATTTGCTCAGATCAAGCTTGCCCCTTTTGGGAAGTTGCATAAATATGTGGAAAAACTTGAAGATTTTATGGCCCTCCTTGCTTATGAAGAACCAGAGAAATCTCCAATGTTTCATCTTCTTAGCGTGGATTATCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGCGCATGGAAATTTGCCGAGCTATACAGCAATGGAAAGGCTGATCAAGCAGGCGACTGTAGTTAGACACTCCTTAAGCCAAGAGCTAGGCACGATTCAAAGAAGAATCGTCTCATGGAAAGTATATGAAATTGATTGTGAAAGGAAGATCCCAACTCCCAACTCTGAAACATTTCCGTTTTTCGGGATAATGTTGTCAATTGTTTCTCCTCCGTCGTCTTCCTCGTTTGTTCTTCATGACAGGAGCTTCTCCTTTAGCGTCTTCCCAAAGAGGCGTTACCGAAACAGAAGTTTGTCTGGGTATTTGAGCTACAGCTCGATTAAGTGCAAATTAGCTAGGGTGGTGGACTCTTCCGCTAACCCAGCTACGTTAACAAAAGAACCTCATAAGTATTTTGATCAGGCTATCATAACAGTTCGTTCAGGAGATGGAGGACATGGTACAGTTCTTAGTATGCCCAACCAACAAACAGGCAAGTCCCAAGGAAAACATGGGAAGGAGAAGGAGAAGGTGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGATGTGGTAATTTATGCCGATGAGGGGAAAGACTCACTGCTGGAATTCCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGCAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAATGGATTTGCTGCCCCAACTCTGCGCATTCCTGTTCCTATAGGTACTGTTATAAAACGTAAAAGAGGGAAATTGTTGGCTGATCTGGTCCACCCAGGTGATGAGATTCTTGTTGCTAGAGGAGGACAAGGAGGGATAAGCCTGATAGATACGCCAGAGAGTAGAAGGAGAAAGTTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTTCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGCTTGGAGTTGATTCTTCGGGTAGTTGCCGATGTCGGTCTGGTTGGACTTCCCAATGCTGGAAAATCAACACTTCTGGCAGCCATTACTCTTGCAAAACCCGATATTGCAGACTATCCTTTCACTACTTTAATTCCGAACCTTGGACGCCTTGGTGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCCACTTTAGCAGATTTACCAGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGTCTTGGACGTAACTTCCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTCGTCGATGCAGCTGCTGAGAGCCCTGTCAATGACTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTTGAAAGGCCGTATGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAGGGACAGGCTTCCATCCATAACTGAGGAAATATTGAGAATTGGAAGGGATGATCTTTATCCTGAGCAAGTGGGGTCTGAAAACAGTGTAGAATCGTCACTTCCAGAAGGCGATCTTGCAACTCCTTCGGAAATTCCAGTTGCAGGTCATCGGGATAGAGAGATTGAAGACTATCCCCGCCCTCTTTCTGTCGTAGGCGTCAGTGTTCTGAAAGGTATGAATATAAGTTTAATGTTGAAAGAGATTCGAGCAGCGTTGAGGAAGTGCAGAGATTCCGATGGAGTGCGATGA 2190 44.16 MDVDPPLYDLIAINDGDIQNIVLSYLVHNCYKETAESFANCTGLKQHTDYLVHMEKRKRIYDFAVEGNALKAIELTEELAQGLLENNEDLHFDLLSLHFVELVCSRKCTMALEFAQIKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILAHGNLPSYTAMERLIKQATVVRHSLSQELGTIQRRIVSWKVYEIDCERKIPTPNSETFPFFGIMLSIVSPPSSSSFVLHDRSFSFSVFPKRRYRNRSLSGYLSYSSIKCKLARVVDSSANPATLTKEPHKYFDQAIITVRSGDGGHGTVLSMPNQQTGKSQGKHGKEKEKVKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHNGFAAPTLRIPVPIGTVIKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRRKLMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLGGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAESPVNDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGRDDLYPEQVGSENSVESSLPEGDLATPSEIPVAGHRDREIEDYPRPLSVVGVSVLKGMNISLMLKEIRAALRKCRDSDGVR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 428271 435744 - Cp4.1LG06g00930.1 Cpe06g00087 470867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00087 729 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 273 725 - -
Cpe06g00087 729 SMART ctlh 53 110 IPR006595 -
Cpe06g00087 729 MobiDBLite consensus disorder prediction 322 341 - -
Cpe06g00087 729 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Cpe06g00087 729 CDD Obg 499 637 IPR031167 GO:0005525
Cpe06g00087 729 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Cpe06g00087 729 Gene3D GTP1/OBG domain 300 497 IPR036726 -
Cpe06g00087 729 Pfam 50S ribosome-binding GTPase 500 627 IPR006073 GO:0005525
Cpe06g00087 729 PRINTS GTP1/OBG GTP-binding protein family signature 557 572 IPR006073 GO:0005525
Cpe06g00087 729 PRINTS GTP1/OBG GTP-binding protein family signature 574 592 IPR006073 GO:0005525
Cpe06g00087 729 PRINTS GTP1/OBG GTP-binding protein family signature 501 521 IPR006073 GO:0005525
Cpe06g00087 729 PRINTS GTP1/OBG GTP-binding protein family signature 522 540 IPR006073 GO:0005525
Cpe06g00087 729 ProSitePatterns GTP1/OBG family signature. 559 572 IPR006074 GO:0005525
Cpe06g00087 729 Gene3D - 498 726 IPR027417 -
Cpe06g00087 729 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 499 720 IPR031167 GO:0005525
Cpe06g00087 729 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 273 725 IPR045086 GO:0003924|GO:0005525
Cpe06g00087 729 Pfam CTLH/CRA C-terminal to LisH motif domain 54 195 IPR024964 -
Cpe06g00087 729 SUPERFAMILY Obg GTP-binding protein N-terminal domain 301 465 IPR036726 -
Cpe06g00087 729 SMART toby_final6 106 201 IPR013144 -
Cpe06g00087 729 MobiDBLite consensus disorder prediction 657 677 - -
Cpe06g00087 729 Pfam GTP1/OBG 360 496 IPR006169 -
Cpe06g00087 729 ProSiteProfiles Obg domain profile. 299 498 IPR006169 -
Cpe06g00087 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 719 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00087 - - - cmax:111473505 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00087 Cpe-Chr6:428271 Cpe09g00860 Cpe-Chr9:7896743 1.37E-16 dispersed
Cpe02g01234 Cpe-Chr2:11107762 Cpe06g00087 Cpe-Chr6:428271 3.04E-30 transposed
Cpe08g00202 Cpe-Chr8:1367247 Cpe06g00087 Cpe-Chr6:428271 1.53E-54 transposed
Cpe02g00099 Cpe-Chr2:498953 Cpe06g00087 Cpe-Chr6:428271 9.40E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00087 Cpe_Chr06 FPKM 29.530569 35.287514 0.0 0.121223 0.581555 0.0 0.646653 0.0 0.0 0.0