Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00092 ATGAGACTAGCTTCTCCAAACCCAAGGACTTACATAGGATCTGGCAAAGTTGCAGAAATCAAGAGTGCAATTCATGCATTAGGTATAGAGACTGTCATATTTGATGATGAGCTTTCAGCTGGTCACACGGACTATATTAATTTTTCAGAAGCCCGGGAACATATCTTATCGATGACGAGCGCCTCCCTCGTCAGTTTTTTTCCCCGCCCTTCAATCCCAGAACAATGCTCATCATGTACTTCTTCGAACCAGAATCGCGCACTTTTCCCCTTCGCCTCAAGAAAGGATTCGAGGAATTCTATCAGAACCCTTTGTAGTACTTTTCAACAAGAGCCTCTCGTCGTGTCCTCCGATAATCTCCCTTTCCATGGTTCTTTTGTCAAGCCTATTCAGGAAGTAGAAGGAACCAAAGATACTGATGAGCTCATCCATGGCGTCTCCAGTTCTGAACCAGAGCCTAAATCGCAGTTATCGAGTAGGGTTAAAAAGAAGGCACAAGAAGACGGGGATAGCCTCGAGAGTAGGTTTAAGCTGCGAAATGGAAGGGAGATTTTTGAAGAACAAGCCTACCTCGTTGGCTTAGAGCGGAAAGGAGATGTTGGCCAACTTTTTAGCATAGACGAATCTCTGAAAGAACTGGCACAGTTAGCTGACACTGCTGGACTAAAGGTCGTTGGTTCAACATATCAAAAACTAGCTTCTCCAAACCCAAGGACTTACATAGGATCTGGCAAAGTTGCAGAAATCAAGAGTGCAATTCATGCATTAGGTATAGAGACTGTCATATTTGATGATGAGCTTTCAGCTGGGCAACTGAGAAACTTGGAAAAATCATTTGGTGGAGATGTTAGAGTGGCATTGGCACAAATGGAATACCAGTTACCACGACTTACAAAGATGTGGACTCACCTTGAGCGTCAAGCAGGAGGGCAGGTGAAAGGTATGGGTGAGAAGCAAATTGAAGTGGATAAGCGTATCTTACGAACGCAAATTGGTGTTCTCCGGAAGGAATTAGAGTCTGTTAGGATGCATCGAAAACAGTACAGAAGCCGGCGCTTTTCTGTACCTGTCCCGGTAGTTTCTTTGGTTGGATATACAAATGCTGGAAAGAGTACGCTCTTGAATCAGTTGACTGGAGCTGAAGTCCTTGCAGAGGATCGATTGTTTGCAACCCTTGATCCAACTACAAGAAGGGTTCAGATGAAGAATGGGAACGAGTTTCTACTCACTGATACTGTTGGTTTCATCCAAAAGCTACCAACTATGCTGGTTGCTGCATTCAGAGCAACACTAGAGGAGATATCAGAATCATCATTGCTGGTTCACGTGGTGGACATCAGCCATCCGCTGGCTGAGCAACAGATAGAAGCTGTGGATAAAGTTCTTTCAGAATTGGATGTGTCATCAATTCCGAAGTTGATGGTTTGGAACAAGGTTGACAAGGTTAGTGATCCTCAACATATTAGACTGGAAGCAGAGAAGAGAGGAGACGTTGTTTGTGTATCTGCCCTGAGTGGTGATGGCTTGGACGAATTCTGTAATGCAGTTCAGGGAAAATTGAAGGACTCGATGGTTTGGGTAGAAGCCTTGATCCCATTTGATCGAGGTGAGCTCCTGAGCACTGTGCATCAGGTTGGAGTGGTAGAGAAAACTGAATACACGGAGAACGGAACACTGGTCCAGGCATACGTTCCCCTCAGGTTCTCAAGGCTGCTTACACCAATGAGACAGCTATGTATATCCTGA 1746 44.9 MRLASPNPRTYIGSGKVAEIKSAIHALGIETVIFDDELSAGHTDYINFSEAREHILSMTSASLVSFFPRPSIPEQCSSCTSSNQNRALFPFASRKDSRNSIRTLCSTFQQEPLVVSSDNLPFHGSFVKPIQEVEGTKDTDELIHGVSSSEPEPKSQLSSRVKKKAQEDGDSLESRFKLRNGREIFEEQAYLVGLERKGDVGQLFSIDESLKELAQLADTAGLKVVGSTYQKLASPNPRTYIGSGKVAEIKSAIHALGIETVIFDDELSAGQLRNLEKSFGGDVRVALAQMEYQLPRLTKMWTHLERQAGGQVKGMGEKQIEVDKRILRTQIGVLRKELESVRMHRKQYRSRRFSVPVPVVSLVGYTNAGKSTLLNQLTGAEVLAEDRLFATLDPTTRRVQMKNGNEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMVWNKVDKVSDPQHIRLEAEKRGDVVCVSALSGDGLDEFCNAVQGKLKDSMVWVEALIPFDRGELLSTVHQVGVVEKTEYTENGTLVQAYVPLRFSRLLTPMRQLCIS 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 448897 457274 + Cp4.1LG06g00810.1 Cpe06g00092 470872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00092 581 PANTHER GTP-BINDING PROTEIN HFLX 2 43 IPR016496 GO:0005525
Cpe06g00092 581 PANTHER GTP-BINDING PROTEIN HFLX 283 569 IPR016496 GO:0005525
Cpe06g00092 581 PANTHER GTP-BINDING PROTEIN HFLX 160 285 IPR016496 GO:0005525
Cpe06g00092 581 MobiDBLite consensus disorder prediction 143 173 - -
Cpe06g00092 581 Pfam GTP-binding GTPase Middle Region 281 352 IPR032305 -
Cpe06g00092 581 Gene3D - 357 524 IPR027417 -
Cpe06g00092 581 CDD HflX 317 520 IPR030394 GO:0005525
Cpe06g00092 581 Pfam HflX C-terminal domain 490 559 IPR045498 -
Cpe06g00092 581 PANTHER GTP-BINDING PROTEIN 6-RELATED 2 43 - -
Cpe06g00092 581 PRINTS GTP1/OBG GTP-binding protein family signature 360 380 IPR006073 GO:0005525
Cpe06g00092 581 PRINTS GTP1/OBG GTP-binding protein family signature 427 445 IPR006073 GO:0005525
Cpe06g00092 581 Gene3D - 282 343 - -
Cpe06g00092 581 PANTHER GTP-BINDING PROTEIN 6-RELATED 283 569 - -
Cpe06g00092 581 PANTHER GTP-BINDING PROTEIN 6-RELATED 160 285 - -
Cpe06g00092 581 TIGRFAM GTP_HflX: GTP-binding protein HflX 279 518 IPR016496 GO:0005525
Cpe06g00092 581 Gene3D - 199 281 IPR042108 -
Cpe06g00092 581 Hamap GTPase HflX [hflX]. 210 549 IPR016496 GO:0005525
Cpe06g00092 581 MobiDBLite consensus disorder prediction 156 173 - -
Cpe06g00092 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 530 IPR027417 -
Cpe06g00092 581 Pfam GTP-binding GTPase N-terminal 2 43 IPR025121 -
Cpe06g00092 581 Pfam GTP-binding GTPase N-terminal 208 281 IPR025121 -
Cpe06g00092 581 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 358 524 IPR030394 GO:0005525
Cpe06g00092 581 Pfam 50S ribosome-binding GTPase 360 478 IPR006073 GO:0005525
Cpe06g00092 581 Gene3D - 1 54 IPR042108 -
Cpe06g00092 581 TIGRFAM small_GTP: small GTP-binding protein domain 359 515 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00092 K03665 hflX; GTPase - csv:101219907 920.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00103 Cpe-Chr2:515559 Cpe06g00092 Cpe-Chr6:448897 5.15E-07 dispersed
Cpe06g00092 Cpe-Chr6:448897 Cpe09g00001 Cpe-Chr9:542 4.46E-33 dispersed
Cpe06g00091 Cpe-Chr6:446281 Cpe06g00092 Cpe-Chr6:448897 3.47E-136 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00092 Cpe_Chr06 FPKM 9.300097 9.244561 9.648548 10.486752 7.732371 6.119658 7.842333 3.951658 4.047855 6.471747