Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00104 ATGCCTCTGAGAGGCATAGTTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGAGAATTCTTCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCATCTTTTCCGGTTCCGATCGACCAGAGCCGCTGGGCGAGTTTACCTCCGGAGCTTCTTCTAGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTAAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGACACTCCGATCCAGTGCTTCATCAAGAGAGAAAGGGCAACGTCAACGTTTCGACTTTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTCTTGCTTACTGCAAAAAGATTTCGACGAGCCATGAGTACAGAGTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCCAAAACTGCGAACCAGTAGATCAAAGCGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCGACGAACTATACAGTCGCTGCCGTAGCTTACGAGCTGAACGTCCTCCGCACGAGAGGCCCGAGACGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCCACGGAGTTTAAAGACTGTATCAATGAGCATCATTCATCGACATCGATTTGCGAAGGTAAGAAGCCGATAATCGAGTCTCCGAAGCCTCAAGAATCAATGTCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGCTGGTGCCTCAATTTCAAAGGGCGCGTCACGGTAGCCTCAGTGAAAAACTTTCAGCTGGTTGCTGCTGTGGAGACAAGTGAAAATGTGTCTGCAGCTGAACAAGAGCGAGTGATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCATGCCTTTGCAATTTGCCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1224 48.2 MPLRGIVREQSEIREGSENSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIDQSRWASLPPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRFRRAMSTEFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYTVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHSSTSICEGKKPIIESPKPQESMSPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSENVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFHAFAICLSSFDTKPACE 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 513960 516850 + Cp4.1LG06g01020.1 Cpe06g00104 470884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00104 407 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cpe06g00104 407 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cpe06g00104 407 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cpe06g00104 407 PRINTS Tubby superfamily signature 317 334 IPR000007 -
Cpe06g00104 407 PRINTS Tubby superfamily signature 335 351 IPR000007 -
Cpe06g00104 407 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Cpe06g00104 407 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Cpe06g00104 407 ProSitePatterns Tub family signature 1. 335 348 IPR018066 -
Cpe06g00104 407 Gene3D Tubby Protein; Chain A 115 407 IPR025659 -
Cpe06g00104 407 MobiDBLite consensus disorder prediction 8 27 - -
Cpe06g00104 407 Gene3D - 52 105 - -
Cpe06g00104 407 Pfam Tub family 118 402 IPR000007 -
Cpe06g00104 407 PANTHER TUBBY-RELATED 1 407 - -
Cpe06g00104 407 MobiDBLite consensus disorder prediction 1 27 - -
Cpe06g00104 407 SUPERFAMILY F-box domain 44 100 IPR036047 GO:0005515
Cpe06g00104 407 Pfam F-box domain 57 104 IPR001810 GO:0005515
Cpe06g00104 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
Cpe06g00104 407 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 407 - -
Cpe06g00104 407 SUPERFAMILY Tubby C-terminal domain-like 106 407 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00120 Cpe06g00104 CCT
Cpe02g00120 Cpe06g00104 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00104 Cpe-Chr6:513960 Cpe14g00525 Cpe-Chr14:3322335 0 dispersed
Cpe19g00814 Cpe-Chr19:6094376 Cpe06g00104 Cpe-Chr6:513960 4.28E-180 wgd
Cpe02g00120 Cpe-Chr2:604113 Cpe06g00104 Cpe-Chr6:513960 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49628 PF01167 Tub 1.30E-104 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00104 K19600 - csv:101222500 755.362