Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00113 ATGGTAAACGTGACTCTGGGATGGCATTTATGGCGGTTCAGAATAAGAGGCGGCGATGGAAGTTCAAGCTCACCGGCGGTATCTGCTAGTTGTAGCTTTGTTGTTTGCGGTTTAGGTCAGGGGGAATCGTTGAACTCCAGTATGGAGTGGACGGCGTTACTCGATCTCCGATCATCGTTAGGGCTAAGAGGCAAAGATTGGCCAATAAAAGCCAATCCCTGTTCCGCTTGGATGGGAATTAAGTGCAAAGCCGGTCGAGTTGTTGGGATCACTGTGTCAGGTCTGCGGCGAACTCAGAGTGGGCAGCTCAGCCCTCGTTTCGCCGTCGATGCGCTCGCTAATTTTACCTCCTTGGTTTCGTTCAATGCGTCTGGTTTTTTGCTTCCTGGCTCCATTCCGGACTGGTTTGGTCAGTCGCTCGTTGCTCTCCAAGTGCTTGATCTGCGCTCTTCTTCGATCGTTGGCCCAATACCTACCTCTATTGGCGATTTAAGTAAGCTCACTGATCTTTATTTATCTGGTAATAGTCTTACTGGTTCTATGCCTTCGGCAATAGGACAGTTATCTCAGCTATCTGTTCTTGATCTCTCGAGAAATTTGCTTACTGGCTCAATACCTCCCATTCTTTCATCTCTTCACAATCTTATACGCCTTGAACTTGCCTCGAATTTTTTAAGTGGACCTATCCCACCCAGTTTAGGCACTCTTACTAAACTGCAATTGTTGGATCTTTCGGACAATAGTTTAACGTCCTCTGTACCAAGTGAATTAGGTAACCTTTCAGAACTACTGCTGCTTGATCTCGGCAAGAATTCACTGACCGGTGCACTACCTGTGAATTTGAGGGGGCTAAGGAATTTGGAAAAGATGTATATTGGAGACAATGGCTTGGAGGGCCCTTTGCCAGATGATTTGTTTCGAAGCCTTTCTCAGTTGGAAATTTTGGTTTTGAGAGGTAATAAACTTGATGGTCGTCTGCATCATGGCTTGCTATCTCACCCCAAATTGAGGTTTTTTGACGCATCCAACAACAACTTTACGGGTAGCTTGCCAAGTTTTGTTCCAAACAGTATGGCTGCGTTCAACTTTTCAAATAATTTTCTGTATGGTCATCTAAATCTACCGCTGGAATTGCATGGATCAATCGATTTATCTGGGAACTATTTCCAGGGTGTTGTACTCAACAAGAGTCATAATGCTATCCTCAGTGGAAACTGCCTGGATATGGAGCCAGATCAAAGAGATTTCGAGGCTTGTAGCCTCTTCTACTCTGAGAGAACCTTAACTTTTGAAGGTTTTGGAAAGGGAAATTCAGACAAACTAGACCTTCGTCATGATGAAAACAATCGCTTGAAGTTCATAATGGTGGGACTATTTGGTGGATTGGGCTTTGTTGTTATGTTTGTGATTATCCTCGTAGTTCTCTTGAAATTTTCTGGTGAAGGGAAAGTAAATAAAAGAGGAAAAGCAAATGTAGGCCCTGTCCCAGATGGACACGGCCCTTCACTTCCAAAGGATCCAGTCTACTTTGCTGGTCTGGGAGATTCATTTACTTATGAGCAGTTGCTCCACGGTACTGGGAATTTCTGCAAAGACAATCTTATAAAACAGGGTCACTCTGGAGATCTTTACAAGGGGTTCCTGGAGGGTGGCCTTCCTGTAGTGATTAAAAAGGTAAATATGCAGTATTTGAAGAATGAAAGCTTGAGTGAGGCCTGTGTTGTAGATGGGGATCAGCACCAAAATGCCTTCACGAGATTGCGGAGAAAGCCACAAAGCTCCGAACAATGCTCTTCTGGCTCCTCACCAGCATCCTGTTCGCAGGACGTTCACTGTTTTGGTAAAGTATTGTTAGAACTTGTGACGGGAAAACTTAGTATCAGCAAAGCAGAAGAAGATGCTACAACAAAGGAGTGGTTGGAACACACCTTATCTAACATAAGTATCCATGATAAGGAGCTCGTAACACAGATAGTCGATCCATCGTTGATGATAGATGACGATCTATTGGAAGAGGTATGGGCGATGGCGATCATTGCCAAGTCGTGCCTGAACCCCAAACCATCTAGACGACCCCTCATGAGATACATCCTTAAGGCATTGGAAAATCCTTTGAAAGTAGTCAGGGAAGAACTCTCTAGCTCCGGCAGGCTGCGCACAACTTCATCAAGAAGATCTTGGAGTTCTGCTTTTCATGGTAGCTGGAGGCGCAGCTCATCAGATGTAAATAGAGAAAACGGCAGTGGCTCTAAACAACCAGGAAGATTAAGCTCCCATGGCAGCTGTGGATATGATTTCTCATCTTCAAATAAAAGGATATCCAATGAAATTGTCCCCGAACCAGAGGAGTTTGGAGACGTCGAGAGGCAAGATTGA 2376 44.74 MVNVTLGWHLWRFRIRGGDGSSSSPAVSASCSFVVCGLGQGESLNSSMEWTALLDLRSSLGLRGKDWPIKANPCSAWMGIKCKAGRVVGITVSGLRRTQSGQLSPRFAVDALANFTSLVSFNASGFLLPGSIPDWFGQSLVALQVLDLRSSSIVGPIPTSIGDLSKLTDLYLSGNSLTGSMPSAIGQLSQLSVLDLSRNLLTGSIPPILSSLHNLIRLELASNFLSGPIPPSLGTLTKLQLLDLSDNSLTSSVPSELGNLSELLLLDLGKNSLTGALPVNLRGLRNLEKMYIGDNGLEGPLPDDLFRSLSQLEILVLRGNKLDGRLHHGLLSHPKLRFFDASNNNFTGSLPSFVPNSMAAFNFSNNFLYGHLNLPLELHGSIDLSGNYFQGVVLNKSHNAILSGNCLDMEPDQRDFEACSLFYSERTLTFEGFGKGNSDKLDLRHDENNRLKFIMVGLFGGLGFVVMFVIILVVLLKFSGEGKVNKRGKANVGPVPDGHGPSLPKDPVYFAGLGDSFTYEQLLHGTGNFCKDNLIKQGHSGDLYKGFLEGGLPVVIKKVNMQYLKNESLSEACVVDGDQHQNAFTRLRRKPQSSEQCSSGSSPASCSQDVHCFGKVLLELVTGKLSISKAEEDATTKEWLEHTLSNISIHDKELVTQIVDPSLMIDDDLLEEVWAMAIIAKSCLNPKPSRRPLMRYILKALENPLKVVREELSSSGRLRTTSSRRSWSSAFHGSWRRSSSDVNRENGSGSKQPGRLSSHGSCGYDFSSSNKRISNEIVPEPEEFGDVERQD 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 554903 559531 + Cp4.1LG06g01050.1 Cpe06g00113 470893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00113 791 PRINTS Leucine-rich repeat signature 191 204 - -
Cpe06g00113 791 PRINTS Leucine-rich repeat signature 236 249 - -
Cpe06g00113 791 PANTHER - 35 568 - -
Cpe06g00113 791 Gene3D Phosphorylase Kinase; domain 1 508 587 - -
Cpe06g00113 791 SUPERFAMILY L domain-like 112 372 - -
Cpe06g00113 791 MobiDBLite consensus disorder prediction 734 791 - -
Cpe06g00113 791 MobiDBLite consensus disorder prediction 776 791 - -
Cpe06g00113 791 Gene3D Ribonuclease Inhibitor 305 411 IPR032675 -
Cpe06g00113 791 Gene3D Ribonuclease Inhibitor 205 304 IPR032675 -
Cpe06g00113 791 PANTHER - 568 749 - -
Cpe06g00113 791 SUPERFAMILY Protein kinase-like (PK-like) 527 705 IPR011009 -
Cpe06g00113 791 Gene3D Transferase(Phosphotransferase) domain 1 590 732 - -
Cpe06g00113 791 Gene3D Ribonuclease Inhibitor 46 204 IPR032675 -
Cpe06g00113 791 SMART LRR_typ_2 164 187 IPR003591 -
Cpe06g00113 791 SMART LRR_typ_2 309 333 IPR003591 -
Cpe06g00113 791 SMART LRR_typ_2 284 308 IPR003591 -
Cpe06g00113 791 SMART LRR_typ_2 188 212 IPR003591 -
Cpe06g00113 791 SMART LRR_typ_2 236 260 IPR003591 -
Cpe06g00113 791 PANTHER RECEPTOR-LIKE PROTEIN 55 568 749 - -
Cpe06g00113 791 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Cpe06g00113 791 MobiDBLite consensus disorder prediction 734 775 - -
Cpe06g00113 791 PANTHER RECEPTOR-LIKE PROTEIN 55 35 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00113 - - - csv:101223061 832.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00127 Cpe06g00113 CCT
Cpe02g00127 Cpe06g00113 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00119 Cpe-Chr4:1093670 Cpe06g00113 Cpe-Chr6:554903 7.59E-180 dispersed
Cpe06g00113 Cpe-Chr6:554903 Cpe15g00542 Cpe-Chr15:6275604 1.08E-64 dispersed
Cpe16g00238 Cpe-Chr16:4460289 Cpe06g00113 Cpe-Chr6:554903 4.30E-138 wgd
Cpe02g00127 Cpe-Chr2:628788 Cpe06g00113 Cpe-Chr6:554903 1.59E-103 wgd
Cpe05g01255 Cpe-Chr5:8783791 Cpe06g00113 Cpe-Chr6:554903 3.31E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g947 Blo01g01562 . Bda01g00529 . Bpe02g00391 Bpe04g00214 . . . . Cma01g01910 Cma09g00158 Car01g01491 . . Cpe06g00113 . . . . . . . . . . . . . . . Cone4ag1911 Cone7ag1825 . . Lsi04g01665 Csa03g04208 Chy04g00510 . . . . . . . . . . Cmo01g01972 Cmo09g00157 . . . Car09g00140 . Cpe02g00127 . . . . . . . Cla05g01941 . . . . . . . . . Cme04g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004382 1 6 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 0 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00113 Cpe_Chr06 FPKM 0.675998 0.602508 0.997994 1.243736 3.427537 4.177933 3.582235 1.626746 1.08946 1.702495