Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00118 ATGGAGAGCGACGACGATTTCCAGTTACTTTCGTCTCCCGCGGTCGATTCCCCTCTCGTTTCGGGGAGGAAGCTGAAGCGGTTGAAGAAGGCTAGTGTTCTATCGGAGGAGTTGCCGAGGGTCGATGATCAATTTTCGAGTGGAGTGTTGGGGGAATTTTCGAGGATCGATGATCGGTTCGATGATAGCCTTAAGATGCGTGAATTGAGTGCGGCGGAAACTGATGCCGATGATTCTGATAAATTTAACGGCCAAGATCTGGATGATTCCGATGAGCTTCGACAATCGGGATCTGGATCGAGGGATTTGGACGATGGTGGCAACTTGGAACCTAGTCTTGGTCTGGATGATCAGGAAAATGATTCTGGAGCCGAGAAGGGCTTGGAATTTGATGCCGTCGCTGGTATTGATGAAATAGATGAATATCAAAGTCCGAGGATAGGAGAGGAAAGTGGCGATTCCCTGGTAGATGAACTGGTGAAGAAACGGCCAAGTTTGGATTCATTCGAGGACGAGAGAGAAGCAAAGAGGAGGAAATCAAAGAACAAAAGGCTCAAGAGCAGTGGAGAGCCTGAAGATTTCAACGAGACTGCGGTCTCCAAAAGGACTCTTGAGAAGGAGAGAAGAGAATACGTTGAACAACTCCGCGCCGAGTCTCAGAGACTCTTGCGAGATACCAGAGGGGCAGCATTCAAGCCCATGCCACTTGTTCGGAAACCGATATCCTCAGTGTTGGAGAAGATCCGACAAAGGAAGCTTGAGCTCTCTAGGAAATCTATCAATATTGAGAATGCCATTCTAGACTGCGACGACGATGACAATTATCTGTGCACAGAGGTCGTGATCAAGCATAGGTTGTCTGTAGAAGGGAGGGCGGATTCTGTAGAAAGAGAATGCGAGGATATGGATCAGCATCCTGCTGATTTGGGGAACCGAAAAGGTTCAATGTGTATAGATGAAAGGAGTAATGGGACAAACATGCCCTTCGAGAGGGAAAAGGCTACCGACGACGTCACAGAAGCATTTTGGACTCCTATTAATGACACTCAGGAACTCTTTTCTGATTCCCAAACAAGCAATGGAGACGATGTATCAAATGAGATGTCCAAAAATCCTCTGCAAGAAAATTTTACGCCATCTGTATTGGCTATGAATTTAAAGCATGAATCTGCACCTCTTGATGATGAGTTGAACGAGACATCCAGAAGTCATTTGCAAGAAAATTTCACACCATCCGTATTGGCAATGAATTTAAGGCTCGATTCTGCAGCCCTTGATGAGGATTCTGATGAGGAGGATAATGATAAGGAGAATGTAAATCCACATCCACATGGTTTGTCAAACTTGCCTTCATTGGCAAGCGGGGATCCTGTTAAAGCTTTTGTTGATGATGAAGCTGAGGAAGAAGATGACAGTGACCATGATATGCGCTTTCAAGATGAAGATGAAGACGAGTACACTGATTCAGAAGAGCTTCAAGATATGATAGCAACTGCATACGAAGAAAATCCATTAGACAATGAAAAACGCAACGAACTCCATCAGAAGTGGCTTGAACAGGAAGATGCTGCTGGAACAGAAGATCTTTTGCAGAAATTGAAATATGGATCAAAATTTACTACACCAGCTTTGCTGGATGATGTAAATAATGAAGGAGAAAATGATGATTTTGAATTTTGTGAAGCAGCCGCAGAAGATTTACTTCCGTTGAATGTTGCTCGAATGAACATTCGAAAAGTAAAGCAAATGCTTCCTCAAATGTATACAGATAATGATGATCAGTACATGTCCGACGACGAGGAAACAGAAAGGAGGATAGAAAGAGAACGTGAGGAAAAATCCACATTTCTGTCGCCTGCTGAGGATGAGAGCACTAGAGAAGTTTTTGGTCTTATTAAGAAGCTGAATGTTGTATCCGATGTAAAGAAGAGACCCAAAGCACAATCGTTTTTGGACCCTCCACTAACTGGTGTAGGCAAGAACATAACATCCAAGTCATCTTTCTTAGGTCGAAGTTCAAATTTATCTCTTTCTTCATCCCGTAAGCACGTTTCATCAATCAACAGTCGTTCTTTCATTTTCGGTCGAGATGATAGCAATAGCAAGAGTGCAATTCCAACGATGGAAGAAACTTCTGATCAGGGCCAGAATGAAAATAAACCTACAAGGATTTCTTCAGCCAAGTTTAGTTACTCCCAAGTGAGACCAAGTGCACAGAACGAAGCTAAACCAGGCAGTTCATTGTTTGATATATTAAGGCAATCGTCCTTGCAATTGCAACGCAAACCATGCACTTTTGGTGAGGAGTCCAGCCAAATGAGTTCTGCATTCGCGTCATTCAAGTTGGAGAAGACACACATGAAGAAGCCAATAAAGACTGAAGGGAGATTTCTAATATAA 2400 43.46 MESDDDFQLLSSPAVDSPLVSGRKLKRLKKASVLSEELPRVDDQFSSGVLGEFSRIDDRFDDSLKMRELSAAETDADDSDKFNGQDLDDSDELRQSGSGSRDLDDGGNLEPSLGLDDQENDSGAEKGLEFDAVAGIDEIDEYQSPRIGEESGDSLVDELVKKRPSLDSFEDEREAKRRKSKNKRLKSSGEPEDFNETAVSKRTLEKERREYVEQLRAESQRLLRDTRGAAFKPMPLVRKPISSVLEKIRQRKLELSRKSINIENAILDCDDDDNYLCTEVVIKHRLSVEGRADSVERECEDMDQHPADLGNRKGSMCIDERSNGTNMPFEREKATDDVTEAFWTPINDTQELFSDSQTSNGDDVSNEMSKNPLQENFTPSVLAMNLKHESAPLDDELNETSRSHLQENFTPSVLAMNLRLDSAALDEDSDEEDNDKENVNPHPHGLSNLPSLASGDPVKAFVDDEAEEEDDSDHDMRFQDEDEDEYTDSEELQDMIATAYEENPLDNEKRNELHQKWLEQEDAAGTEDLLQKLKYGSKFTTPALLDDVNNEGENDDFEFCEAAAEDLLPLNVARMNIRKVKQMLPQMYTDNDDQYMSDDEETERRIEREREEKSTFLSPAEDESTREVFGLIKKLNVVSDVKKRPKAQSFLDPPLTGVGKNITSKSSFLGRSSNLSLSSSRKHVSSINSRSFIFGRDDSNSKSAIPTMEETSDQGQNENKPTRISSAKFSYSQVRPSAQNEAKPGSSLFDILRQSSLQLQRKPCTFGEESSQMSSAFASFKLEKTHMKKPIKTEGRFLI 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 575584 579997 + Cp4.1LG06g01030.1 Cpe06g00118 470898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00118 799 MobiDBLite consensus disorder prediction 185 201 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 462 490 - -
Cpe06g00118 799 PANTHER DNA LIGASE-LIKE PROTEIN 394 796 - -
Cpe06g00118 799 PANTHER DNA LIGASE-LIKE PROTEIN 1 396 - -
Cpe06g00118 799 Coils Coil 166 186 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 425 490 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 70 201 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 590 619 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 299 332 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 698 722 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 598 619 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 70 99 - -
Cpe06g00118 799 MobiDBLite consensus disorder prediction 142 178 - -
Cpe06g00118 799 Coils Coil 201 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00118 - - - csv:101210293 1214.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00137 Cpe06g00118 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00137 Cpe-Chr2:674917 Cpe06g00118 Cpe-Chr6:575584 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g923 . . . . . . . Bma01g02312 . . Cma01g01897 Cma09g00165 Car01g01480 . . Cpe06g00118 . . . . . . . . . . . . . . . . . . . Lsi04g01650 Csa03g04195 Chy04g00524 . . . . . . . . . . Cmo01g01962 Cmo09g00162 . . . Car09g00145 . Cpe02g00137 . . . . . . . Cla05g01953 Cam05g2099 Cec05g2108 Cco05g2165 Clacu05g2091 Cmu05g1967 Cre05g2085 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008724 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00118 Cpe_Chr06 FPKM 9.104608 11.427913 6.22276 5.555947 17.127428 15.16224 15.138517 5.798337 5.525377 4.917319