Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00127 ATGGGAGAAGCAACCATGCAATCTCTGCAACTCTATGTGTTCTGCTCCAAGAACTCTGACTTTTTTATCAAAGAGGTGAAGGTGGATAAACAATCAATTGGAGGGTGTGGCGGATTGATGAGAAGAAAGAAAGGTGCTGTGGCCATTTTTCTTAATTACAGAGGCATCCGAATGCTTTTCATTTCTTGTCATCTCTCTGCTCACGCTCACAAGGTAGAGGAGAGGAACTGGGAGTGCAAACACATAACGCACTCGTTATTTTCAAAGAAATGGAACCCTTATGCATTGCCCGTTCAAGTCACCGTTTGGTTGGGGGATCTCAACTACAGAATTGAAGGGATCAGCACACACCCAGCTAGGAATTTGATCCACAAAAATCTTCTTTCGCTTCTGCAAGAAGCTGAAAGAGGACGCATATTCGATGGCTACTGCGAAGGAACATTGTCGTTCAAACCGACCTACAAATACAACGTCGGAAGTAGCAAATACGACAGCAGTTATAAGGTGAGAGTACCATCGTGGACGGACAGGATCTTGTTCAAAGTAGATGAGGAGGAGAAGATTAGTGCAAATCTATGTTCCTATGACTCAATGGATGAGATTTACAGTTCCGACCACAAGCCAGTGAAAGCTCAGCTTTGTCTTCGACCGTCTTAG 657 44.14 MGEATMQSLQLYVFCSKNSDFFIKEVKVDKQSIGGCGGLMRRKKGAVAIFLNYRGIRMLFISCHLSAHAHKVEERNWECKHITHSLFSKKWNPYALPVQVTVWLGDLNYRIEGISTHPARNLIHKNLLSLLQEAERGRIFDGYCEGTLSFKPTYKYNVGSSKYDSSYKVRVPSWTDRILFKVDEEEKISANLCSYDSMDEIYSSDHKPVKAQLCLRPS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 629953 632944 - Cp4.1LG06g01290.1 Cpe06g00127 470907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00127 218 PANTHER LD06095P 4 215 - -
Cpe06g00127 218 Gene3D Endonuclease/exonuclease/phosphatase 1 218 IPR036691 -
Cpe06g00127 218 SUPERFAMILY DNase I-like 41 217 IPR036691 -
Cpe06g00127 218 SMART i5p_5 1 218 IPR000300 GO:0016791|GO:0046856
Cpe06g00127 218 PANTHER INOSITOL 5-PHOSPHATASE 4 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00127 - - - cmax:111473705 417.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00127 Cpe-Chr6:629953 Cpe18g00242 Cpe-Chr18:4067927 4.89E-22 dispersed
Cpe06g00127 Cpe-Chr6:629953 Cpe01g02134 Cpe-Chr1:17996928 1.61E-21 transposed
Cpe06g00127 Cpe-Chr6:629953 Cpe13g00701 Cpe-Chr13:6525488 1.29E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g876 . . . . . . . . . . . Cma09g00178 . . . Cpe06g00127 . . . . . . . . . . . . . . . . Cone7ag1796 . . . . . . . . . . . . . . . . Cmo09g00174 . . . Car09g00159 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015462 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 1 1 1 0 0 1 1 1 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00127 Cpe_Chr06 FPKM 1.699933 3.595365 3.30009 2.30773 3.642095 1.591812 3.899246 0.905587 1.53524 3.15361