Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00130 ATGTTCTCAAAAGCCTTCACGTTTAGTAAGGACATTCGGAACTTGGCGTCTGAAATGTTCCCGGGCCAAGTCGAAGCCGCTTTGAAGGAGGCTCCCGGTGCCAAAACGGCGCCGGATAAGGTTATCGTCGCCATCAAGGCTGAGAGAGTGATTTCCAAAACTGCACTGGCTTGGGCTCTTACCCATGTGGTCCGTCCCGGTGACTGTATAACCCTGCTCGCTGTCTTCTCCGTCGAGAAAACTGGCAGAAGGTTCTGGAATTTTCACAGATGGAGTGGGGATTGTGCGAATGCTGTTCAGGAGAATCTGCCGGATCGGGTACATGAGATCTCCGAGTCATGTTCACAGATGGTGCTTCATTTCCACAATCAAGTTGAGGTTAAAGTGAGAGTTAAGGTGGTCACAGGAACACAGGGAGGAGCTGTCGCTGCTGAAGCAAAGTTAAAAGGAGTTAACTGGGTCGTACTAGACAGGAAATTGAAGAATGAGGTAAAAAGTTGCCTGGAAGAACTGAGCTGCAATATTGTTACAATGAAAGGGTCTCAACCGAAAGTTCTCAGGCTTAATTTGGAGTGTTGGAGTGAACCTCAAACTCCCTTCTTTTCGGCTAATTCGTCTCCTGTTCGAAAAGGTCAACAAAATAGGATGAAGCAGACAGCTTCACTAGCAAGCAGACCAGAAGAAGAACCTAGTGCCTCATTCAGAAAATCCTCTAAAGAAGGGTCAAAATTGGGTACTGATGCAGTGTCTTCTATTTTCCTTGTGTATGAGCAAAACCCTCTATATGAAGGGAACTTAAAAGGCAATCACTTGCCAATTAATGAGACTAACGATTTAAGCATTTCAGTATCATCATCCAACTCAGTGGAAGAAAAAGTTCTGTCTCTACCTCCAACATCTGTGGCTTCAAATCAAAAATGTGTTTATTGGATTTCTCAGAACCATAACCTTTCTGAGGGAAAAACTCTATCCAAGTCCAAAAGAAGATTCCTTAAATTTGCTTCAACTCCCAAGGTGCCATTCAGTAATCCTTCAAGTCTTGAGAAGAGTGCGACTTTTGAAGATATGAGACTCAACCAGTCTGAGAGAAAGGATTACATTGTGGACTCAAATATCAGGGATGCCGTCTCTTTGGGCAGAGTATCCTCTGCACCCCCTCCTCTGTGCTCATTATGTCAACACAAAGCGCCGGCTTTTGGAAAACCCCCCAGACAGTTCACTCTCAAAGAGCTTGAGGAAGCTACTGACAGATTTTCGGATTTGAACTTCTTGGCAGAAGGCGGTTTTGGAATTGTTCATAGAGGAATCTTGAGAGATGGTCAAGTTGTAGCTGTGAAGCAGTTGAAATGTGGAGGCTTACAAGCAGATGCTGATTTTTGTCGAGAAGTTCGGGTGTTGAGTTGTGCACAACACAGAAATGTAGTGTTGCTGATTGGGTTCTGTATTGAGGACACCATGAGGTTATTGGTTTATGAGTACATATGCAATGGTTCATTGGATTTCCATTTACATGGTTTCAATCATGGAATTTCTAAGTTTCAGTCACTGACAGGGAGTAGAAGCCAGTTAAATTGGCATTCAAGGCAAAAGATAGCAATAGGAGCAGCACGGGGTTTACGTTATCTTCACGAAGATTGCAGAGTTGGGTGTATAGTGCATAGAGATATGCGACCTCACAATATCCTCCTAACTCATGATTTTGAACCCATGGTTGCTGATTTCGGGCTGGCAAGGTGGCATTCTAAATGGTCTACCAGTGTTGAGGAGCAAGTCATTGGAACTTCAGGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACAAAAAGTGGATGTATATGCATTTGGCATGGTTTTATTAGAGTTGATTAGTGGTAAAAGAAGCTGTGAGCTGCACCGTCTAGAGGGAAAACAATTTATATCAGAATGGTTCCACCCCATCTCTGCATTGCAAATTCAACATTTACTAGCTAGTAGTAACCATTTGGTAGATCCATGCTTAGCATCCGAGCAATCCCCCGACTTCTGTTATCAACTGCATTCTATGGTCCGTGCGGCTTCCTTGTGTCTATGTCCAGATCCTGAATCAAGACCCTCAATGTCAAAGATTCTTCGAGTGCTAGAAGGAGGAGATCCAGTTGTTCCTCTTGGTTTAGACTTCGATCCAGTCGGCTGCAGAAGTGCACACTTGGATGGTTTGACGTCTCACAAACCAATCGAAGCAAGAAGAAGCCATACTCGTACACTCTCACAATGA 2262 44.12 MFSKAFTFSKDIRNLASEMFPGQVEAALKEAPGAKTAPDKVIVAIKAERVISKTALAWALTHVVRPGDCITLLAVFSVEKTGRRFWNFHRWSGDCANAVQENLPDRVHEISESCSQMVLHFHNQVEVKVRVKVVTGTQGGAVAAEAKLKGVNWVVLDRKLKNEVKSCLEELSCNIVTMKGSQPKVLRLNLECWSEPQTPFFSANSSPVRKGQQNRMKQTASLASRPEEEPSASFRKSSKEGSKLGTDAVSSIFLVYEQNPLYEGNLKGNHLPINETNDLSISVSSSNSVEEKVLSLPPTSVASNQKCVYWISQNHNLSEGKTLSKSKRRFLKFASTPKVPFSNPSSLEKSATFEDMRLNQSERKDYIVDSNIRDAVSLGRVSSAPPPLCSLCQHKAPAFGKPPRQFTLKELEEATDRFSDLNFLAEGGFGIVHRGILRDGQVVAVKQLKCGGLQADADFCREVRVLSCAQHRNVVLLIGFCIEDTMRLLVYEYICNGSLDFHLHGFNHGISKFQSLTGSRSQLNWHSRQKIAIGAARGLRYLHEDCRVGCIVHRDMRPHNILLTHDFEPMVADFGLARWHSKWSTSVEEQVIGTSGYLAPEYINGGMVSQKVDVYAFGMVLLELISGKRSCELHRLEGKQFISEWFHPISALQIQHLLASSNHLVDPCLASEQSPDFCYQLHSMVRAASLCLCPDPESRPSMSKILRVLEGGDPVVPLGLDFDPVGCRSAHLDGLTSHKPIEARRSHTRTLSQ 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 641243 646416 - Cp4.1LG06g01280.1 Cpe06g00130 470910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00130 753 PANTHER OS01G0253100 PROTEIN 35 744 IPR045271 GO:0004714|GO:0006468
Cpe06g00130 753 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Cpe06g00130 753 Gene3D Transferase(Phosphotransferase) domain 1 495 714 - -
Cpe06g00130 753 MobiDBLite consensus disorder prediction 203 226 - -
Cpe06g00130 753 ProSiteProfiles Protein kinase domain profile. 418 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00130 753 MobiDBLite consensus disorder prediction 203 242 - -
Cpe06g00130 753 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 35 744 - -
Cpe06g00130 753 Pfam Protein kinase domain 421 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00130 753 ProSitePatterns Tyrosine protein kinases specific active-site signature. 551 563 IPR008266 GO:0004672|GO:0006468
Cpe06g00130 753 Gene3D HUPs 39 179 IPR014729 -
Cpe06g00130 753 SUPERFAMILY Protein kinase-like (PK-like) 399 709 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00130 - - - csv:101207605 1391.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01719 Cpe-Chr2:14080705 Cpe06g00130 Cpe-Chr6:641243 1.51E-06 dispersed
Cpe03g01074 Cpe-Chr3:8875429 Cpe06g00130 Cpe-Chr6:641243 6.57E-41 dispersed
Cpe04g01065 Cpe-Chr4:9360096 Cpe06g00130 Cpe-Chr6:641243 8.99E-126 dispersed
Cpe06g00130 Cpe-Chr6:641243 Cpe18g00366 Cpe-Chr18:5038267 4.54E-75 dispersed
Cpe01g01174 Cpe-Chr1:6982805 Cpe06g00130 Cpe-Chr6:641243 3.83E-77 transposed
Cpe01g02090 Cpe-Chr1:17701846 Cpe06g00130 Cpe-Chr6:641243 1.41E-81 transposed
Cpe05g01252 Cpe-Chr5:8763463 Cpe06g00130 Cpe-Chr6:641243 3.64E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62457 PF00069 Pkinase 7.50E-40 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00130 Cpe_Chr06 FPKM 23.042236 23.005302 46.461494 47.024799 48.852463 46.5956 54.685623 38.92281 41.292004 41.964165