Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00134 ATGATGGGGACGGAGTCTCGCCGGGAGATGGTGACCGCCAGGCGGCCTTGCTTCTATGCTTTCTATTCCTCCACACTTTCTTCAGAACGACTGAAACTTCCTTCGAAATTTATCGGATACTTGGAAGAAATCATAGTTCGATCAGTTACATTAATTGGTCCTAGCGGCCAAACTTGGCTTGTTAACTTGATCCAGCAGAATGATGACTTGTTCTTCTGTGACGGATGGCCAACTTTTGCACGAGATCATGCCCTAGATTGCGGTGATTTTTTGGTTTTTAGATATGATGGCGAGTTGCATTTCACTGTGCAAATTTTTGATGAGAGTACATGTGAGAAAGAAGGTGCATTTCATTCTCAATGCAGTCAAGATAACACAGGTCATAAAAGAGACAGGGAGGAGGACAATTCATCCCCACAAACATGCGCGGAAGCTGTGGCGAAGAAAATGAGGAGCATTTTTTATGTTCATTCAGAATGCAGGGAGAACCTAGCGGCCATAAGAACTGTGGAGGTTCATAAAAATGGAACTGGTCAGAATGGGATCAGTAAAGTTGATGACAATATCCCTTATCAATTTTCTATGGCACATCTTCCTAGCTGCAAACTGAAGTTGGTCCTTCACAATTTGAAAGGGGAATCCTGGACAGTGAATTCTGTTCCTACAACAAGAGTGAATACAAGTCATACTCTTTGTGGAGGATGGATGGCCTTTGTGCGTGGGAATGATGTGAACATGGGAGATATATGTGTTTTTGAACTTGTTCGGCACTGTGAATTGCGTGTTCACATTTTCAGGGTTGGAAAGGAAATCTCTGAGGATCAAAGTGGTAAAGGAACTTTGAATAGGCTAGGTGCTGGCCATGCAGTAATTCCTCGTAAAGCACTCAAAGGTTTGCCAAAGAAAATGAATGGCAACTCTCTTAAAGTTCATTCAAAACGCTCCAAAAGGATTGAAATACATGATAAAAAATGTTTGAACTCTTGGCAAGAACCCTTCTGCAATGATGCTAGGAAACATTCTAGTGCAAAAAAGGTATCCACTAAAGTCATGGTTTGTTCTCAATCAAAAAAGCCGTCTAAGCGTTTGGTTAATCGGAGAACCAGTGTCAAAGGCGATCTTGTATTACCAGCTAGACTTGGTTTGCGAGCAATGGTAGCACGTGACGAAGAAAGGGCAGCTAAATCATTTGTTTCTGTTTTTCCAAGTTTTGTCAGAATCATGAAAAAGTTCAACACAAGTGGTTCATATACTTTGAAAATTCCGCATCAGTTTTCTTCAGCACATTTCCCTAACAGCAGAACTGAGATTATACTTCATGGTCCAAATGGGGGACGTTGGATTGTGAACTCAGTACCAGACTCAATGGGGCGAATGATGCATACCTTTTGCGGTGGTTGGATGTCGTTTGTTCGTGACAACGGTATCCAGATGGAGGATATCTGTATATTTGAACTTATTGGCAAGTGTGAATTGCTGGTTCATATAACCGGAGTTGGGAAGAAAGGGTTTGACCTCAGCAGTGAAGTCACAACTTGCAGTGAATTAGCTATTGTACCGACGACAAGCAATGATCCATCTCGGTAA 1587 42.03 MMGTESRREMVTARRPCFYAFYSSTLSSERLKLPSKFIGYLEEIIVRSVTLIGPSGQTWLVNLIQQNDDLFFCDGWPTFARDHALDCGDFLVFRYDGELHFTVQIFDESTCEKEGAFHSQCSQDNTGHKRDREEDNSSPQTCAEAVAKKMRSIFYVHSECRENLAAIRTVEVHKNGTGQNGISKVDDNIPYQFSMAHLPSCKLKLVLHNLKGESWTVNSVPTTRVNTSHTLCGGWMAFVRGNDVNMGDICVFELVRHCELRVHIFRVGKEISEDQSGKGTLNRLGAGHAVIPRKALKGLPKKMNGNSLKVHSKRSKRIEIHDKKCLNSWQEPFCNDARKHSSAKKVSTKVMVCSQSKKPSKRLVNRRTSVKGDLVLPARLGLRAMVARDEERAAKSFVSVFPSFVRIMKKFNTSGSYTLKIPHQFSSAHFPNSRTEIILHGPNGGRWIVNSVPDSMGRMMHTFCGGWMSFVRDNGIQMEDICIFELIGKCELLVHITGVGKKGFDLSSEVTTCSELAIVPTTSNDPSR 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 708192 712011 - Cp4.1LG06g01410.1 Cpe06g00134 470914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00134 528 ProSiteProfiles B3 DNA-binding domain profile. 404 500 IPR003340 GO:0003677
Cpe06g00134 528 SMART B3_2 182 268 IPR003340 GO:0003677
Cpe06g00134 528 SMART B3_2 404 500 IPR003340 GO:0003677
Cpe06g00134 528 SMART B3_2 17 109 IPR003340 GO:0003677
Cpe06g00134 528 MobiDBLite consensus disorder prediction 124 138 - -
Cpe06g00134 528 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Cpe06g00134 528 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 299 513 - -
Cpe06g00134 528 SUPERFAMILY DNA-binding pseudobarrel domain 401 498 IPR015300 -
Cpe06g00134 528 MobiDBLite consensus disorder prediction 119 140 - -
Cpe06g00134 528 CDD B3_DNA 189 266 IPR003340 GO:0003677
Cpe06g00134 528 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 299 513 IPR044837 -
Cpe06g00134 528 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 6 157 - -
Cpe06g00134 528 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 188 282 - -
Cpe06g00134 528 Gene3D - 178 269 IPR015300 -
Cpe06g00134 528 Gene3D - 386 500 IPR015300 -
Cpe06g00134 528 SUPERFAMILY DNA-binding pseudobarrel domain 188 267 IPR015300 -
Cpe06g00134 528 CDD B3_DNA 402 496 IPR003340 GO:0003677
Cpe06g00134 528 ProSiteProfiles B3 DNA-binding domain profile. 189 268 IPR003340 GO:0003677
Cpe06g00134 528 Pfam B3 DNA binding domain 189 266 IPR003340 GO:0003677
Cpe06g00134 528 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677
Cpe06g00134 528 Pfam B3 DNA binding domain 404 496 IPR003340 GO:0003677
Cpe06g00134 528 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Cpe06g00134 528 CDD B3_DNA 23 107 IPR003340 GO:0003677
Cpe06g00134 528 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 157 IPR044837 -
Cpe06g00134 528 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 188 282 IPR044837 -
Cpe06g00134 528 Gene3D - 9 111 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00134 - - - csv:101214902 842.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00152 Cpe06g00134 CCT
Cpe06g00134 Cpe07g00453 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00134 Cpe-Chr6:708192 Cpe16g00020 Cpe-Chr16:256262 6.11E-07 dispersed
Cpe07g00470 Cpe-Chr7:3015036 Cpe06g00134 Cpe-Chr6:708192 3.10E-13 dispersed
Cpe20g00331 Cpe-Chr20:1858703 Cpe06g00134 Cpe-Chr6:708192 1.17E-10 dispersed
Cpe10g00411 Cpe-Chr10:2410157 Cpe06g00134 Cpe-Chr6:708192 1.86E-11 wgd
Cpe19g00594 Cpe-Chr19:4924533 Cpe06g00134 Cpe-Chr6:708192 1.23E-15 wgd
Cpe02g00152 Cpe-Chr2:782926 Cpe06g00134 Cpe-Chr6:708192 0 wgd
Cpe04g00274 Cpe-Chr4:3411573 Cpe06g00134 Cpe-Chr6:708192 2.27E-07 wgd
Cpe05g01232 Cpe-Chr5:8630927 Cpe06g00134 Cpe-Chr6:708192 4.79E-11 wgd
Cpe06g00134 Cpe-Chr6:708192 Cpe07g00453 Cpe-Chr7:2899129 1.12E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49630 PF02362 B3 2.60E-12 CL0405 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00134 Cpe_Chr06 FPKM 7.768659 6.286135 9.47039 9.889475 9.837611 9.380445 13.012684 11.99579 12.339994 15.456121