Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00135 ATGTATGAAGAAAGTGGCGGGGTGGTTGGTCGAGTTGCCGACACTGAATTCATGCATCTTTCACTATGGAAACCGTTGTCACATTACGCCGCTTTAATCATGGACAAGAAAACCAGAAGGCGACACGGTTCTGGTCTAACGGATAGGCGCAAATCTTCCATTCTCAGGCAGTTGCAAGAAAACAGGCTCAGAGAGGCTCTGGAGGAAGCTTCTGAAGATGGGTCTCTCGCAAAATCCAGAGACATTGACTATGAATCGCCAAATCAGGACAGAAATGTTCGACGGTCGAGATCTCTCGCTCGACTTCATGTCGAAAAGGAGTTTCTACGCGCCACTGCACTCGCCGCCGACCGGACCTATTGCACCGGGGATTTGATTCCAAATCTCTTTGATGCCTTCACCAAGTTCCTCACTATGTACCCAGAATTCCAGTCGTCGGAAAAAATCGACCAGTTGAGATCAGAAGAGTACGAGCATCTCTCAGAGTCTGGCGCCGAGAAGGGCACGATTGAACACGATATCAAGACTAGGATTATGGATTATCTGAACACTTCTGAGAATGAATATGGGCTTGTTTTTACAGCCAGTAGGGGATCGGCCTTTAAGCTCTTGTCCGAGTCTTACCCTTTTCATACAAACAAGAAATTGTTGACTATGTTTGATCATGAGAGTCAATCTGTGAGTTGGATGGCTCAGAGTGCTAAACAAAGAGGTGCAAAGGTTTACAGAGCATCGTTTAAATGGCCAACATTGAGACTCAGCTCAAGGGAGCTGAGGAAACAGATTACAAACAAGAGGAAAAGGAAGAGGAAGAAGGATTCTGTTGGTGGCCTTTTTGTGTTTCCTGTTCAATCAAGAGTGACAGGGGCGAAGTATTCTTACCAGTGGATGGCACTTGCCCAGCAGAACAATTGGCATGTATTGCTCGATGCTGGCTCGCTCGGTCCTAAGGACATGGATTCCTTGGGGCTCTCCCTCTTCAGGCCAGATTTTATCATCACGTCATTTTATCGTGTTTTCGGGTCTGATCCAACTGGGTTTGGCTGCCTGTTGATTAAGAAATCTGTTATAGGGAGCTTGCAAAACCAATCTGGGCGGACTGGTACAGGAATGGTGAGGATACTCCCCATTTTTCCGCAGTATATTGGCGATTCTTTTGGTGGTTTGGATGTCTTATCTGGGATTGAAGATGATGCAATCAATGATCAGGAGGATTCCGAAACTGAGAAGCATCAGGAACCACGCATGCCTGCTTTTTCAGGCGTGTTTACGTCGAACCAGGTGAGGGATGTGGTCCAGACTGAAATGGAGCAAGATTATAATAGCTCAGACAGGGATGGGGCAAGTACCATTTTTGAGGAAGCTGAGAGTATCTCAGTTGGCGAGGTTATGAAGAGTCCAATCTTCAGTGATAACGAGTCGCCAGACGATTCATATTGGATTGATTTGGGTCGGAGTCCATTCGGTTCTGATAATTCAGACCATTTGATCAAGCAAAAAACATGGTCGCCCTTACCACCATCTTGGTTTGCTGGAAAGAGGAGCAGTAGCCATCTTTCACCAAAACCAGCATCTAGGTTGATGAAAAGTCCTATGTATGGTGATGATAAGCAGGCGAAGGATTCTTGTGTTGTTAGTGAAATTCGGGAGGATTCAGAAATTGGAGAAGAATCGATTTTGACGAGGTTGAGTTTTGCCTCAAACGGAACCCGACCTGCGAATCAAACATCTGAGTTTCAGGATCTGAAGCTCTCAAATTCCACTACATCAGGAGCCTTCAAAGACCTGAAGGAAAGTGCTATAAGAAGGGAGTCAGAGGGGGAGTTCAGACTCTTGGGTAGGAGGGAAAGGAGTAGATTTTCTGAACTTGGGTTCTTTGGCGTAGAAGAGGGAGATAGCGCGATTAGCACGGATCATCGGGTAACATTTAGCGTAAAATATAATGAAAAGCAAAGGTTACATGAGATGGTCGAGCTTGGAGAAGCATCTAATGCAGCCTTTGGCGATGAGGAATCGACCAGTGATGGAGATTATGACGATGAGCAAGAATGGGGAAGGAGGGAGCCTGAAATGATCTGTCGTCATCTCGATCATACTGATATGTTGGGCCTCAACAAGACTACCCTCCGACTAAGGTATCTCATTAACTGGCTTGTCACTTCGTTGCTTCAACTCCGGTTACCCGGTCGAGATAGTGTAGGGGTTCACCTTGTACAACTGTATGGACCAAAGATCAAATATGAAAGAGGTGCTGCAATTGCTTTCAATGTAAAAGATAGCAATGGAAGAGGGCTAATACATCCGGAAGTTGTACAAAAACTGGCTGAAAATAATGGAATATCTCTTGGAGTTGGCATTCTTAGCCATGTGCAGGCGAAGGACGTTCCGAAGCAGAATTCGGGACAGTGCGAACTCGAAGACATGGCGTTGTGCAAACCCATGGCTAATGGACATAACAAGAAGAAACCATATTTCCGAGTCGAGGTCGTCACAGCTTCCCTTGGATTCCTCACCAACTTTGAAGATGTTTATAAAATGTGGGCTTTCATAGCCAAGTTTCTAAATCCATCATTTCTTGAAAACGAAACTTTGTCTTCCATCCCTGAGAGTTTGGAATCCTATCACAGGAGCCTGTTTTAG 2640 45.53 MYEESGGVVGRVADTEFMHLSLWKPLSHYAALIMDKKTRRRHGSGLTDRRKSSILRQLQENRLREALEEASEDGSLAKSRDIDYESPNQDRNVRRSRSLARLHVEKEFLRATALAADRTYCTGDLIPNLFDAFTKFLTMYPEFQSSEKIDQLRSEEYEHLSESGAEKGTIEHDIKTRIMDYLNTSENEYGLVFTASRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKQRGAKVYRASFKWPTLRLSSRELRKQITNKRKRKRKKDSVGGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGSDPTGFGCLLIKKSVIGSLQNQSGRTGTGMVRILPIFPQYIGDSFGGLDVLSGIEDDAINDQEDSETEKHQEPRMPAFSGVFTSNQVRDVVQTEMEQDYNSSDRDGASTIFEEAESISVGEVMKSPIFSDNESPDDSYWIDLGRSPFGSDNSDHLIKQKTWSPLPPSWFAGKRSSSHLSPKPASRLMKSPMYGDDKQAKDSCVVSEIREDSEIGEESILTRLSFASNGTRPANQTSEFQDLKLSNSTTSGAFKDLKESAIRRESEGEFRLLGRRERSRFSELGFFGVEEGDSAISTDHRVTFSVKYNEKQRLHEMVELGEASNAAFGDEESTSDGDYDDEQEWGRREPEMICRHLDHTDMLGLNKTTLRLRYLINWLVTSLLQLRLPGRDSVGVHLVQLYGPKIKYERGAAIAFNVKDSNGRGLIHPEVVQKLAENNGISLGVGILSHVQAKDVPKQNSGQCELEDMALCKPMANGHNKKKPYFRVEVVTASLGFLTNFEDVYKMWAFIAKFLNPSFLENETLSSIPESLESYHRSLF 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 712587 716390 - Cp4.1LG06g01420.1 Cpe06g00135 470915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00135 879 Gene3D - 146 423 IPR015421 GO:0003824
Cpe06g00135 879 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 163 872 - -
Cpe06g00135 879 PANTHER OS03G0765800 PROTEIN 163 872 - -
Cpe06g00135 879 MobiDBLite consensus disorder prediction 68 94 - -
Cpe06g00135 879 SUPERFAMILY PLP-dependent transferases 160 369 IPR015424 -
Cpe06g00135 879 PANTHER OS03G0765800 PROTEIN 49 163 - -
Cpe06g00135 879 MobiDBLite consensus disorder prediction 512 541 - -
Cpe06g00135 879 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 49 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00135 - - - bhj:120087021 1442.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00153 Cpe06g00135 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00135 Cpe-Chr6:712587 Cpe16g00021 Cpe-Chr16:260371 0 dispersed
Cpe10g00412 Cpe-Chr10:2417885 Cpe06g00135 Cpe-Chr6:712587 0 wgd
Cpe19g00596 Cpe-Chr19:4937168 Cpe06g00135 Cpe-Chr6:712587 0 wgd
Cpe02g00153 Cpe-Chr2:788477 Cpe06g00135 Cpe-Chr6:712587 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g837 . Blo12g00938 Bda01g00558 Bda03g00231 Bpe02g00415 Bpe04g00196 Bma04g00183 Bma01g02291 . . Cma01g01875 Cma09g00198 Car01g01461 . . Cpe06g00135 . . . . . . . . . . . . . . . Cone4ag1547 Cone7ag1404 . . Lsi04g01604 Csa03g04151 Chy04g00569 . . . . . . . . . . Cmo01g01933 Cmo09g00193 . . . Car09g00167 . Cpe02g00153 Bhi09g02024 . . . . Mch11g0244 . Cla05g01995 Cam05g2146 Cec05g2161 Cco05g2209 Clacu05g2137 Cmu05g2009 Cre05g2134 . . . Cme04g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005433 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00135 Cpe_Chr06 FPKM 14.680963 14.882988 17.710896 18.115667 23.063713 23.169577 22.608498 19.007418 17.478546 16.47912