Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00149 ATGGAGACCTGCTCCGACGAATCAGGAGTGGCCGAGTCCGGCGGCGGGTGCCCCAATGAACCCCTGGCAGCGGCGAACATTCTATGTAGCCGCTCCATTCCCAAAGTTTTCGTCCACTTCAATCTTTCCGGCAGGCCGGATATGCAAGACTTGAATTTGGATTACGAAATTATGCTTTGTGCTTGGGCGAGAAGTCGGTGTTCTCATCGTTTGATCTATCTTCGTCGTTTCTCCTCATCGTCTTCATCTTCTTCTTCATTGTCTACTGCGCAAAAATCAATCGAGGGCTCGGAGAGTCTCCAGAATTCGCCTCTAGTCTCACCCCCAGTTCCAATTTTGCATCGTCCACAGAACAGTTTGTTGCCTAATGCATCACCCGCTTCTTTTTCTCGCAGTTCGATTATAACTATCTCCGCTGCTGTTTTTTCTGCCTTAGTCGCTTCCATTTCCCTTTATCCCTCTGAAAATCGGTCTGATCGCTCCCAGGAGACTCATAATCCCTTGTATGATGGGATTGAAGGGGCAGTTCAGAGATCTAGCGATTCATTTAAGAGACTTTTTCATCACATTAAACAAACTGGCGTTGCCGCCTCGGTTCTCTGGCAATCGTTAAGGTCTGTGATGTCGTCAGCCAATCATGAGGTCCGGTCCGGCTTTGAACTCAGGGTCGCGGCATTGCTGGCTGACATTGCTGCAGCCAATGGGAGCCGTAGGGCGGCGATTGTCGGGGCGGGAGGCGGTGCTGTGGTGGATTGGTTGCTCGAGTCGGTGGCGGTTCCTCGGGATGGATGTGGAACTCAGGCCGAGTCGGCTAGAGCGCTGGCCTACTTGATTGCTGATCCTGATGTGTCTGCTTCCGTCCTGGGCAGGCCTCGTGCTGTTCCAAATCTTTTGAGGTTCATCTTCTCGTGTAAGCCTCGGCGAACGGAGCAGCATCCAAGACGTAGTTCATTCGATATTTCTGATTCTTTGAAAGGTAGGAGCATGCTTGTGGCTGCCATCATGGATATAGTTACGTCCAATTGTGATAGGTTAGAGAAGCTTTCTTTTGAGCCATCCTTGCCCGCGCATGCTGAAACTAGAGATATTGCAGCAGCCATTCAAGTTATTGAGGAAGGGGGTTTCCAATTTGATGAATCAAGTGGTGGCGAAGATGAAGATGGTGGAAGAGGAATCAAAGGAATAGGAATTAAGATTCTTGGAGGCACTTCCATTTTGGGACTTTCTAGAACAAGTGGGTTTGTGAAGTTGGCATATTCTGATGTTGGTCATGTAGAACTGGTGAAAAATACACCTAAAAGTCTAGTATCAGAGAAGCATGATAGCTCACTTGTAGCCAATTCTTCTGTTGTTCCTGGTCTGTGGGATGATTTGCATTGTGCGCATGTTGCTGTACCTTTTGCGGCGTGGGCGTTGGCAAATTGGTCAATGGCATCAGAACTGAACCGATTGCACATTCATGAACTAGATCAAGACGGACATGCTGTCATGACTGCACTAATGGCACCTGAAAGGTCTGTGAAATGGCATGGAAGTTTGGTAGCTAGGCTTTTACTGGAGGATCGTAATCTTCCCTTAAATGATTCTGTTTCTGATTGGAGCTCAAGCCTTCTTTCTACTGTTTCTCATGCAAGTAAAAATGATGACATCCCTTTGGCTCAGGCTGCTTTGTCTGCATTTTTGGCTTCTGTTGAACGGTTCCCTGAGGCACAAAAGAATATTATGGAGAAGGGTCTTCATCTAATGAGAGATGCTGCTATACGGACCCAAAAACATGGAGAGCTTCAAGAAGCTTTAGCAAAGGCATTAGAGTTGCTCAGCACTGGGTGGATGCGTCTATCAGCTGAAGAGAGTCAGAGATGGTCTGCTATACTACTTCAATGGGTCTTTGGCAAATTTTCTTCTGAATCTTTGAGGTCTTCTGCAACTAAAATCTTATCTTGCATTCTTGAAGACTATGGACCAAGCTCCATACCTATTTCTCAAGGATGGCTGGCTATACTGCTGACTGAAATTCTCGGTTCTACTAAGAAGACTGCAGTGAATGGAGCCACTGAGCTTAAAAATGACAAAGTGAAGACTAAGATTGAGCAGTCAAACATTGTTTTTGCCAGTCAAGTTGCTAGTCAGCTAGCAGGTGCAGTTGTTAACCTCGTGGTACACCAGTTTGGTGCAACTACTGATTCATTAGATACCTCTCCTCCGTTGGCAGATTTACTTTCACGTGAACCTTTTATAGCACATTTAAAGAATATAAAAAAAGAGAATAGTCCAAAGTTTGATGCAGCTGATTCTGCAATGGCAACATTAAAGGGGATTAAAGCACTGACTGAAGTTTGTGCTGATGATTCTTCATGTCAGAGCAGAATAGCTGATTTTGGCGTTCTCTTTTTGCTGAGACGGCTTTTGTTATGTGATGATTATGAGAAGCTGGCAGCCATGGAAGCATATGATGCATCCAGAGCTTTTGAGGCTCAAGAACGTACTTCAAATGTCTCTGGGGAACCATCACTCTCAGAGAAGAAAAATGACTCATCTAGTGTCCGTGTACCGCCTACAGCTCACATCCGTAGACATGCTGCTCGGCTTTTAACCATCCTTTCACTTCTAGAGAAAGTCCAGAAGGAGATTGTTTCTGATGAAGAATTTTGTAGATGGCTTGAGGATTGTGCCAATGGGGCCATTCCTGGTTGCCATGATGCTAAATTGCAAAGCTATGCTAGAGCCACATTGCTAAATATATTTTGTATTAACCGTAGAGCATCTGACAATAGTTCTCCCTCTGATACTGATTCTACAAACAGGAAGAAGAATTGCCCCCGTTATGATGATATGATCTTTTTAATAAACCCCGAACTTCCTCACTGGAAAGTTCATGAAGAAAAGGATCAGGACACTGTTCAAAAGGACGAGTCATCTCATTCAGAAGCTAATTTCATTGATATTGATGGTGTAGCTGTGGGAAATGATAACAATACCTCATCTTCATCTCATACATTTCAGAATGATTCCAGGCTAGACTCTCCTTTAGTAGATGTTGTTTTTATTCATGGCCTCCGTGGTGGACCTTACAAGTCATGGCGCATATCTGAGGACAAATCCTCAACAAAATCTGGACTAGTAGAGAAGATTGATCAGGAGGCAGGGAAACTAGGCACATTTTGGCCAGGTGAATGGCTTTCATCTGACTTCCCAAGGGCTCGTATGTTTACCCTTAAATACAAGACAAATCTCACACAGTGGTCTGGGGCTAGCCTTCCTCTTCAGGTCTTCTATAGCTGCCCACATTTTGGCAGCAAACTAGCAGACATGCCTTGGAGAATGGGTCTTGTATTCCGCCCTGCCCCTACCATAGGAGAGCTGAGAAGTGGGTCTCCTAGATTGGTGGAGCTGAATGATTTTCTCCGTCACCTCCATAAGAAAGGACTGATTGAGGTTCTTAGTTTCTGTGAGACGAAGGTGACCCCAATTGTTGAAGGTTATGGAGGATGGGCTTTCCGAATGGAAATTGTTCCTATTGAATCCGCATATCCTGGCTTTGGGGAACTAGTTGTGTTAGAATCAACGGATCACATAAATTCATGCAAGCCCCTCAGCCGCGCTGACCCTTCATACACAGAGACATTGGAATTTTTGCAGAAGTTGAAATCTCGCTATGGCCCGGCCTTCTTGTTGTCAGCTTCGATTCCAAGGATACCGGCGAAGTCGGATACCAGAACAACAATCTTCAGCCTGACTGTTCCTGTGACGATGTCGCTGCCGGAAAGCGTATCGCTGCGTTCTTTTGAACGAATTTCTCCAACTTATGCTTCTGTTTCTTCCTCCTCCTTAGGTTCTTCGAGACCTTTGAGGAGTTGTACAAGTGTAGCGACTCGGACGATGAAGTTCAGAAATGGAGGTGCTCTGAGGTTGTGCTGCTCGGATTCAAATCATTCTGCTCCTCTGCCTTCCACGACTGCGACAAGCACGGGCTCTGCTCCGCCGGTTCTGAAGAAGAAAAAGAGATACAGGAGAGAGTATCCTGGAGAGAGCAAAGGCATTACTGAGGAGTTAAGGTTCGTCGCCATGAGGCTTCATAATGTTAGTGGTAAAAAGTTATCTGGTGACGCTGTGGATTCATCCAGCGAAGTTGAAGTAGAGGAGAAAGACGACGGAAATTTGGTGTTGAGTGACGATGATAATGATGAGGATGGGGATGGTACACAGACTTGGCAACCGAGCTTGGAAGGGTTCCTTAAATATTTGGTCGATAGTAAGCTCGTCTTCAGCACTGTGGAGCTAATCGTTGATGAATCCAGCGACGTTGCTTATAGTTACTTCAGAAAATCAGGGTTGGAACGTTCAGAATGTCTTGAAAAGGATCTAGAATGGTTCAGTGCACAGGGTATTGTGATACCTGATCCGACCAGTTCAGGAATTTCTTATGCTAAGTATCTGGAGGAACTTGCTGAGAGGAGTGCCCCTTTGTTCCTTTCCCATTATTATAATATCAACTTTTCACATATAGCAGGTGGGCAAGTGATAGCGAAACAGGTTTCTGAGAGACTCCTTGAAGGAAGAAAGCTTGAATTTTATACATGGGAAGAGGATGCAGAAGAATTACTGAAAAACGTTCGTGAGAAGCTTAACATGCTTGGAGAGCACTGGTCTCGGGATGAGAAAAATAAATGTTTGAGAGAAGCAGTCAAGTCATTCCGCTTTTTGGGAGAGATACGCCACCTTCTCATTTCTAGGCTGAAGAAGATGAATGTCTTGATCGACAAGTTGTCGAATTTTGACTTGTATTATTTTGGCTAA 4797 45.19 METCSDESGVAESGGGCPNEPLAAANILCSRSIPKVFVHFNLSGRPDMQDLNLDYEIMLCAWARSRCSHRLIYLRRFSSSSSSSSSLSTAQKSIEGSESLQNSPLVSPPVPILHRPQNSLLPNASPASFSRSSIITISAAVFSALVASISLYPSENRSDRSQETHNPLYDGIEGAVQRSSDSFKRLFHHIKQTGVAASVLWQSLRSVMSSANHEVRSGFELRVAALLADIAAANGSRRAAIVGAGGGAVVDWLLESVAVPRDGCGTQAESARALAYLIADPDVSASVLGRPRAVPNLLRFIFSCKPRRTEQHPRRSSFDISDSLKGRSMLVAAIMDIVTSNCDRLEKLSFEPSLPAHAETRDIAAAIQVIEEGGFQFDESSGGEDEDGGRGIKGIGIKILGGTSILGLSRTSGFVKLAYSDVGHVELVKNTPKSLVSEKHDSSLVANSSVVPGLWDDLHCAHVAVPFAAWALANWSMASELNRLHIHELDQDGHAVMTALMAPERSVKWHGSLVARLLLEDRNLPLNDSVSDWSSSLLSTVSHASKNDDIPLAQAALSAFLASVERFPEAQKNIMEKGLHLMRDAAIRTQKHGELQEALAKALELLSTGWMRLSAEESQRWSAILLQWVFGKFSSESLRSSATKILSCILEDYGPSSIPISQGWLAILLTEILGSTKKTAVNGATELKNDKVKTKIEQSNIVFASQVASQLAGAVVNLVVHQFGATTDSLDTSPPLADLLSREPFIAHLKNIKKENSPKFDAADSAMATLKGIKALTEVCADDSSCQSRIADFGVLFLLRRLLLCDDYEKLAAMEAYDASRAFEAQERTSNVSGEPSLSEKKNDSSSVRVPPTAHIRRHAARLLTILSLLEKVQKEIVSDEEFCRWLEDCANGAIPGCHDAKLQSYARATLLNIFCINRRASDNSSPSDTDSTNRKKNCPRYDDMIFLINPELPHWKVHEEKDQDTVQKDESSHSEANFIDIDGVAVGNDNNTSSSSHTFQNDSRLDSPLVDVVFIHGLRGGPYKSWRISEDKSSTKSGLVEKIDQEAGKLGTFWPGEWLSSDFPRARMFTLKYKTNLTQWSGASLPLQVFYSCPHFGSKLADMPWRMGLVFRPAPTIGELRSGSPRLVELNDFLRHLHKKGLIEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRADPSYTETLEFLQKLKSRYGPAFLLSASIPRIPAKSDTRTTIFSLTVPVTMSLPESVSLRSFERISPTYASVSSSSLGSSRPLRSCTSVATRTMKFRNGGALRLCCSDSNHSAPLPSTTATSTGSAPPVLKKKKRYRREYPGESKGITEELRFVAMRLHNVSGKKLSGDAVDSSSEVEVEEKDDGNLVLSDDDNDEDGDGTQTWQPSLEGFLKYLVDSKLVFSTVELIVDESSDVAYSYFRKSGLERSECLEKDLEWFSAQGIVIPDPTSSGISYAKYLEELAERSAPLFLSHYYNINFSHIAGGQVIAKQVSERLLEGRKLEFYTWEEDAEELLKNVREKLNMLGEHWSRDEKNKCLREAVKSFRFLGEIRHLLISRLKKMNVLIDKLSNFDLYYFG 1598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 801694 818637 - Cp4.1LG06g01560.1 Cpe06g00149 470929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00149 1598 Pfam Heme oxygenase 1418 1570 IPR016053 GO:0004392|GO:0006788
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 80 106 - -
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 1374 1399 - -
Cpe06g00149 1598 Gene3D - 630 937 IPR011989 -
Cpe06g00149 1598 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 63 1089 - -
Cpe06g00149 1598 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1090 1218 - -
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 80 108 - -
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 1312 1326 - -
Cpe06g00149 1598 SUPERFAMILY ARM repeat 546 892 IPR016024 -
Cpe06g00149 1598 Coils Coil 1528 1548 - -
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 1365 1401 - -
Cpe06g00149 1598 Gene3D - 1399 1586 IPR016084 -
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 828 850 - -
Cpe06g00149 1598 SUPERFAMILY Heme oxygenase-like 1403 1577 IPR016084 -
Cpe06g00149 1598 CDD HemeO 1405 1571 IPR002051 GO:0004392|GO:0006788
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 828 851 - -
Cpe06g00149 1598 SUPERFAMILY ARM repeat 223 756 IPR016024 -
Cpe06g00149 1598 MobiDBLite consensus disorder prediction 1312 1339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00149 K23504 SERAC1; protein SERAC1 - csv:101222471 1879.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01181 Cpe-Chr4:10040569 Cpe06g00149 Cpe-Chr6:801694 6.22E-72 dispersed
Cpe06g00149 Cpe-Chr6:801694 Cpe18g00489 Cpe-Chr18:5733352 1.38E-69 dispersed
Cpe02g00167 Cpe-Chr2:856789 Cpe06g00149 Cpe-Chr6:801694 4.94E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g809 . Blo12g00948 . Bda03g00222 . Bpe04g00189 Bma04g00176 . . . . Cma09g00214 . . . Cpe06g00149 . . . . . . . . . . . . . . . . . . Cone20ag0175 Lsi04g01580 Csa04g02389 . . . . . . . . . . . . Cmo09g00207 . . . Car09g00182 . . Bhi09g03347 . . . . . . Cla05g02022 Cam05g2172 Cec05g2188 Cco05g2236 Clacu05g2165 Cmu05g2033 Cre05g2161 . . Chy07g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005432 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00149 Cpe_Chr06 FPKM 0.0 0.0 12.687602 12.731781 0.0 0.0 0.0 17.053406 19.833799 16.954376