Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00163 AAGCTTGATCGATTGCCCCGACGCCAAGGAAGAGTCATACAGCAGCTTCAAAGCCCGATGGACCATTTTCGTCTCTATTTTGGTGCAGAAATTCCTGCTCGCCCTCGCCGCCCCGCTCCTGACCTTACGCGCATTCCTCTCATGGATCCGGACGACAAGGGTTTCAAATATTATGGAGCCTTAACCATGATGGCTTCCCAATTGGCGTATGAAGATTATACAGCTTCCCCCTCCGTTGTTCATTCAGTGGTAAATGGTTGCTGGCAGAATAAAGCTACGACTGGTGCAATTATGTTTCAAAACACAGCGAAAGACCCAAATGTAACAGTAGTGGCATTTAGAGGGACTTCCGTATTTGAGGCTTCGGATTGGATGCTTATAAGAAGCTTTATAATTAACAGGTACGACATCGAAGGCGTAGGATGCGTCCACAATGGCTTCATGAAAGCTCTCAGCGTTCAAAAGGCCACAGGGTTGCCAAAGGAACTTCTCAAACCCCAACTACACGATTTCGCATACCACACTCTCCGTCCAGAACTCAGACACATTGCCAAAACCAACGACAAGGCAAGGTTCATCATCACTGGCCACAGCCTAAGTGGAGCCTTGCCCAACTTATTTGTCACTGTGTTGAGCCTACATGATGAATCAACCGTCCTTGAGAAGTTGGACGCACTTTACAATAAAAATTATGTGATACTAAAGCCGCATAATGCAAACCTGTTTGATCTGTTTCTGTTCTTACTTCCTTTCGGCTTCAAAAAGAGGAAGTTGATGGATTGTCCCGACGCCAACGAAGACTCCTACACAAGCTTTGCTGATCGATTAATAATCTTCGTCTCCTTGCTGTTGCAGATATTCATTCTCGCCATCGCCACCCCGCTCGCTTACTTAGACGTCTTCCTCCAAAAACTCTTCAACTTTGTCTCCTTCAACGGTGGCATTCCGCGCCTTTTCATCAAGTTGATGCGAGATTGGAGAAGAGATTTGGATAGCTCCATAAAACCTAACGACACCTTCAGATATTATAGTGTCCTAACTGTAATGGCTTCCAAACTGTCCTATGAATCCCTTCCTTTTGTCGAATCCGTCGTGAACGATCGTTGGAAGATGAAGTTACTCGGTTACTACGATTTCTGGAATGATTTCCAAAACCGAGCAACGACTCAAGCATTCATGTTTCAAAACACAGCCTCAGATCCAAACATAATAGTGGTAGCTTTCAGAGGGACTTCTCCACTGGACGCATTCGATTGGCAAGTAAATGTGGACTTCTCTTGGTACGACATTCATGGCGTTGGCCGCATTCATAGTGGCTTCATGAAGGCTCTCGGCCTCCAAAAGCGTAAAGGTTGGCCCAAAGAACTCATTCCAACAACAACAACAACAACCCAATTCGCTTACTACACTCTCCGTCAAAAACTCATTGACATTGCCAAAAGCAATGCCAATGCAAGGTTCATCTTCACCGGCCACAGCTTAGGCGCAGCTCTCGCTATCCTCTTCGTTGCCATACTTGGCCTTCACGACGAGTCAACGGTGCTAGAGAAGCTACAGGCCATCTACAGTTACGGCCAGCCGAGAGCCGGCGACCGACACTTTGCAGAGTTTATGGTAAGCATCATCCAAAAATACAACTTTGAATATCACAGATACGTTTATTTTAGTGACTTGGTGCCTAGACTTCCCGCTGATGGCATCATTTTCAAATACAAACACTTCGGCAGCTGCATCTATTTTGACAGTCTTTACAGAGGCAGAATTGTGAAGGAGCAGCCAAACAAGAACTATTTCTCGTTGCTATGGCTGGTGCCCAAGTATCTAAATGCATGGTTGGAGCTTATAAGGAGTTTCGTGATCCCATTTGTGAAGGGTTATGATTACTATGAGAGTTTGCCAATGAAAGGGGTAAGGTTTATTGGACTGTTTATTCCAGGGCTCACCGCTCACATTCCTACGGACTATGTTAATTCCACCCGTTTAGGAAAATTAAACGTACCTCAGGAGATTCTTGGAAATGAAGACTACTGCATAGAACCTGACTACTAA 2049 45.34 KLDRLPRRQGRVIQQLQSPMDHFRLYFGAEIPARPRRPAPDLTRIPLMDPDDKGFKYYGALTMMASQLAYEDYTASPSVVHSVVNGCWQNKATTGAIMFQNTAKDPNVTVVAFRGTSVFEASDWMLIRSFIINRYDIEGVGCVHNGFMKALSVQKATGLPKELLKPQLHDFAYHTLRPELRHIAKTNDKARFIITGHSLSGALPNLFVTVLSLHDESTVLEKLDALYNKNYVILKPHNANLFDLFLFLLPFGFKKRKLMDCPDANEDSYTSFADRLIIFVSLLLQIFILAIATPLAYLDVFLQKLFNFVSFNGGIPRLFIKLMRDWRRDLDSSIKPNDTFRYYSVLTVMASKLSYESLPFVESVVNDRWKMKLLGYYDFWNDFQNRATTQAFMFQNTASDPNIIVVAFRGTSPLDAFDWQVNVDFSWYDIHGVGRIHSGFMKALGLQKRKGWPKELIPTTTTTTQFAYYTLRQKLIDIAKSNANARFIFTGHSLGAALAILFVAILGLHDESTVLEKLQAIYSYGQPRAGDRHFAEFMVSIIQKYNFEYHRYVYFSDLVPRLPADGIIFKYKHFGSCIYFDSLYRGRIVKEQPNKNYFSLLWLVPKYLNAWLELIRSFVIPFVKGYDYYESLPMKGVRFIGLFIPGLTAHIPTDYVNSTRLGKLNVPQEILGNEDYCIEPDY 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 891176 896413 - Cp4.1LG06g01760.1 Cpe06g00163 470943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00163 682 Gene3D alpha/beta hydrolase 61 228 IPR029058 -
Cpe06g00163 682 Pfam Lipase (class 3) 405 565 IPR002921 GO:0006629
Cpe06g00163 682 Pfam Lipase (class 3) 110 217 IPR002921 GO:0006629
Cpe06g00163 682 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 229 666 IPR044819 GO:0004806|GO:0006629
Cpe06g00163 682 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 50 227 IPR044819 GO:0004806|GO:0006629
Cpe06g00163 682 SUPERFAMILY alpha/beta-Hydrolases 339 586 IPR029058 -
Cpe06g00163 682 CDD Lipase_3 340 581 - -
Cpe06g00163 682 Gene3D alpha/beta hydrolase 349 599 IPR029058 -
Cpe06g00163 682 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 229 666 - -
Cpe06g00163 682 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 50 227 - -
Cpe06g00163 682 SUPERFAMILY alpha/beta-Hydrolases 66 211 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00163 - - - csv:101203391 788.104
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00184 Cpe06g00163 CCT
Cpe02g00184 Cpe06g00163 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00163 Cpe-Chr6:891176 Cpe17g00004 Cpe-Chr17:31594 4.34E-07 dispersed
Cpe10g00439 Cpe-Chr10:2554512 Cpe06g00163 Cpe-Chr6:891176 3.52E-30 wgd
Cpe19g00623 Cpe-Chr19:5085739 Cpe06g00163 Cpe-Chr6:891176 2.19E-36 wgd
Cpe02g00184 Cpe-Chr2:943107 Cpe06g00163 Cpe-Chr6:891176 2.00E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g755 . . . . . . . . . . Cma01g01835 Cma09g00234 . . . Cpe06g00163 . . . . . . . . . . . . . . . . Cone7ag1369 . . Lsi04g01552 Csa04g02414 . . . . . . . . . . Sed01g2671 Cmo01g01895 Cmo09g00228 . . . . . Cpe02g00184 Bhi09g03313 Tan01g4775 Cmetu07g1301 . . Mch11g0294 . Cla05g02045 Cam05g2196 Cec05g2214 Cco05g2259 Clacu05g2190 Cmu05g2056 Cre05g2185 . . Chy07g00138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002909 0 2 0 1 0 2 0 2 2 2 1 2 3 3 2 4 2 1 3 2 2 1 2 4 3 2 1 1 5 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00163 Cpe_Chr06 FPKM 0.474086 0.835625 2.015075 1.772997 3.443022 3.076349 3.461286 5.377798 5.713975 5.897069