Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00164 ATGGAAAATGATGATCTGAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCCTCCGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCAGAGTCCTCCTCGCCTCCCTTCACCAACAACCTACCTTATAATTTGCCACAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCGGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATCCAAATAGACCCAGAAGCGGTGAAGCCACCAAAGAGGAGAAACGTCAAGATTTCAACCGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTTGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCTGCAGCAGCATCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA 711 48.8 MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAASGVGFPLEMSSGSYVPMAKPSQMTHNLEQYGDA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 898190 898900 - Cp4.1LG06g01720.1 Cpe06g00164 470944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00164 236 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 228 - -
Cpe06g00164 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 228 IPR045843 GO:0003700|GO:0006355
Cpe06g00164 236 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Cpe06g00164 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 188 IPR036638 GO:0046983
Cpe06g00164 236 Gene3D - 133 196 IPR036638 GO:0046983
Cpe06g00164 236 SMART finulus 136 185 IPR011598 GO:0046983
Cpe06g00164 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00164 Cpe11g00147 CCT
Cpe06g00164 Cpe11g00147 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00164 Cpe-Chr6:898190 Cpe19g00534 Cpe-Chr19:4530320 2.06E-48 dispersed
Cpe11g00147 Cpe-Chr11:809628 Cpe06g00164 Cpe-Chr6:898190 2.38E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49632 PF00010 HLH 1.50E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00164 - - bhj:120087062 296.975