Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00170 ATGAATAGCACAACTTTCGTCTGTAATCCTATGGACGCTCTGCCATTATTGCCCTCCTCTCAGTTGCTGTTTCCAAATAACGCCATCAATTTCAGGCATAGGATCTCCATTCGTGTAAAACCCACTTCTCATGGTTCGTGTAGATGGCGAATCCGAGCCACTGCCGAAAACGGAGCTTCATCGGCGTCGACCTCGCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTCGTGCTTTGGGATCTCGATAATAAGCCCCCTCGTGGGCCGCCTTACGAGGCGGCTATGGCGCTGAAACGAGTGGCGCAACGCTTCGGCCAAGTGGTCGACATGTCGGCTTACGCCAATCGCCACGCTTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGACATTCTTGAGCGCAAAGGGTTGTTCACGCCGTCCGAATCTTACGTCTGCGGGGTCTGCGGTCGCAAGTGCAAAACAAACCTAGACCTCAAGAAGCATTTCAAGCAACTTCATGAACGCGAGCGCCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAAAAGCGGCAGCGTTATAAGGAAAAGTTCGTATCTGGGAACCACAAGTACAATGAAGCAGCCAGGTCTCTGATTACTCCAAAAGTTGGGTATGGGCTGGCCTCAGAATTGAGACGTGCTGGTGTTTTTGTGAAGACAGTGGAGGATAAGCCACAGGCGGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGTTTCTTGTTTCCGATGACTCGGATTTTTCAGAGATGTTAAGGAAGGCTAAGGAGGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGAGCATTGGGTAGGCACGCAGATTTATGGGTCCCATGGATGGGGGTTGAAAATGGGGATGTTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGACGAGGAGAACCGAGGAGGATTTGGATGAAGACGATGGTTTTTCAGTTTCTCGTTATTATGGAGAGGCTGAAAGTGGTAGTGATTTGGAGAGTGTAGTGCAAGAGCTTGCTTCCGCCAGTACAGAGTTCAATGGCTTTAGAATTTCTGCTTTCTCAGAGGGGGAAGATGATGATGAATGGGTTGAAGAGGATGTGGCATCTGACTATCTGCTAGAGATGAGTGACGAGGAAGATGGGTATTTCTGA 1248 49.52 MNSTTFVCNPMDALPLLPSSQLLFPNNAINFRHRISIRVKPTSHGSCRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKEKFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDVTEEDLVPKRWRTRRTEEDLDEDDGFSVSRYYGEAESGSDLESVVQELASASTEFNGFRISAFSEGEDDDEWVEEDVASDYLLEMSDEEDGYF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 923307 924554 - Cp4.1LG06g01690.1 Cpe06g00170 470950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00170 415 Gene3D - 77 316 - -
Cpe06g00170 415 PANTHER - 51 389 - -
Cpe06g00170 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cpe06g00170 415 PANTHER OS06G0166200 PROTEIN 51 389 - -
Cpe06g00170 415 Coils Coil 180 200 - -
Cpe06g00170 415 CDD PIN_LabA-like 170 300 - -
Cpe06g00170 415 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00170 Cpe-Chr6:923307 Cpe14g00866 Cpe-Chr14:7148885 5.03E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49635 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00170 - - csv:101206044 705.286