Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00175 ATGCTCCTTCTCAACAATAACATGGCCGTGGAGCTCATGGTGGGGTTTGGGGATGCTACCACCGCTACTAATTTCACGCCCAAGTTGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCCGATTGATGTCCCATACCCCTAATCAACACCACTCCCAACACGATTCTTCCACCTCCACTACTCCCAATGCTATCGCTCCATACGATGCCGTAGCCGATTCCGTCGTCAGCAATTTCAAGAAGGTCATTTCTTTGCTCGATCGGAATAGAACCGGTCATGCCCGCTTCAGAAGGGCGCCGGTTCTTCATACTCCCCCGCCGCCTCCTCCACCGAAGGTCAAGCCGTTGCAGCACCAAGATCCGAGTTCGTCATCAGCCCCTCAGGTTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACCCCCATCAGCCTTCTCATCCACCGAATACTTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATCCGACTACCACCATCAACTTCGTAGCCTCGCCCCCGATTTCCGCTGCAAATTCCTATATTTCATCGCTAACCGGAGACACCGAAAGCTTACAGCCATCTATGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCACTTTCAACCTCCTCGCTAAAGAGAAAATGCAATTCTATGGACGATTCCGCCATGAAGTGTGCCTCATCCTCCGGTCGGTGTCACTGTTCTAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCGGTGAGCTCGAAACTTGCGGATATCCCACCGGACGATTACTCCTGGAGAAAGTACGGCCAAAAACCCATTAAAGGCTCTCCCCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAACGCTTGTTCTGGAATCGTCATAA 1155 50.39 MLLLNNNMAVELMVGFGDATTATNFTPKLEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNQHHSQHDSSTSTTPNAIAPYDAVADSVVSNFKKVISLLDRNRTGHARFRRAPVLHTPPPPPPPKVKPLQHQDPSSSSAPQVQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDPTTTINFVASPPISAANSYISSLTGDTESLQPSMSSGFQFTHMSQVSSAGKPPLSTSSLKRKCNSMDDSAMKCASSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPATLVLESS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 949236 953293 - Cp4.1LG06g01700.1 Cpe06g00175 470955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00175 384 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 384 - -
Cpe06g00175 384 ProSiteProfiles WRKY domain profile. 306 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe06g00175 384 MobiDBLite consensus disorder prediction 130 145 - -
Cpe06g00175 384 MobiDBLite consensus disorder prediction 114 129 - -
Cpe06g00175 384 SUPERFAMILY WRKY DNA-binding domain 309 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe06g00175 384 Pfam Plant zinc cluster domain 264 309 IPR018872 -
Cpe06g00175 384 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 384 IPR044810 GO:0003700
Cpe06g00175 384 MobiDBLite consensus disorder prediction 107 145 - -
Cpe06g00175 384 Pfam WRKY DNA -binding domain 313 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe06g00175 384 Gene3D WRKY domain 297 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe06g00175 384 SMART WRKY_cls 311 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00194 Cpe06g00175 CCT
Cpe02g00194 Cpe06g00175 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00398 Cpe-Chr2:2230984 Cpe06g00175 Cpe-Chr6:949236 1.54E-77 dispersed
Cpe06g00175 Cpe-Chr6:949236 Cpe16g00152 Cpe-Chr16:3550772 2.63E-14 dispersed
Cpe10g00447 Cpe-Chr10:2618206 Cpe06g00175 Cpe-Chr6:949236 9.94E-111 wgd
Cpe19g00635 Cpe-Chr19:5145825 Cpe06g00175 Cpe-Chr6:949236 4.53E-08 wgd
Cpe02g00194 Cpe-Chr2:1008099 Cpe06g00175 Cpe-Chr6:949236 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49636 PF03106 WRKY 3.90E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00175 - - cmo:103493562 652.514