Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00176 ATGGGAACATACCGATCCTCCCCCATTCTGGCTCTCCTCTTCTTCCTCCTCGTAACTTTACCGTCGGCGTTGACCTCTTCGATCATCCCCGAGAGGACGGACGATGAAGTGATGGCGCTCTACGATCAGTGGCGTGCCAAGCACGGGAAGTTGCACAACCACTTGGGACCGGAAAGCCAGAATCGATTCCACATCTTCAAGGACAATCTCAAGTACATCGATGAAATCAACGCCCAAAATTTGCCCTATCGATTAGGTTTGAACGTGTTCGCAGATCTGACGAACGAGGAGTACCGATCCAAGTACTTGGGAGCTAAAATCGCCGCTGGTTCAAGGCGAAACAAGACGAGCAGCCGCTATCAGCCTCGCCTTGGGGATGAAGTCCCGGACTCCATCGATTGGAGGGAGAAAGGAGCCGTCGCTCCCATTAAAGACCAAGGAAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCCGTGGAAGGCATAAACCAGATTGTTACAGGCGACTTGGTAGCACTATCAGAACAGGAGCTGGTGGATTGTGACATTTCTTACAACGAAGGTTGCAATGGTGGCCTAATGGACTATGCCTTCGAGTTCATCATCAACAATGGCGGCATTGATACTGAAGAAGATTATCCTTATAAAGGCTATGATAGCACCTGCATCCAATCTAAGAAAAATGCTAGGGTCGTTTCAATCGATGATTATGAAGACGTCCCTGTAAACAATGAAAAAGCACTGCAAAAAGCAGCTGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGGGGAGGTAGAAGTTTCCAGCTATATCGATCGGGTATATTCACTGGAAGATGTGGGACAGATTTGGATCATGGTGTTAATGTGGTTGGATATGGGTCTGAAGGGGGCGTCGATTACTGGATTGTGAGAAACTCATGGGGTGCGAGCTGGGGTGAAAGTGGCTACATCAGGATGCAACGTAACGTCGCTTCCCCAAAAGGTCTCTGTGGGATTGCAATGGAGCCTTCTTACCCCATTAAAACCGGACTAAACCCACCTAATCCAGGCCCGACTCCTCCAAGTCCGGTGGAACCCCCAACTCCGGTGGAACCCCCAACTCCGGTGAAACCCCCAACTGTATGCGATGAATATTACGACTGTCCCGCCGCAGAAACTTGCTGCTGCCTCTTCCAGTTTTCAAACACATGCTTTGTATGGGGATGCTGCCCACTGGAAAGCGCCACCTGCTGTGATGACCTTTACAGCTGCTGCCCCCATGACTACCCCGTCTGTGACGTCGGTGCTGGAACCTGCTTGAAGAGCAAGAATGACGTTTTCGGAGTGAAGGCGATGAGGCGCACTGCAGCTGTAGCCAAACCATCGTGGGCACTTGGAGGAGGTGTGAGTGTTGGGAAGAGCAGTGCTTAA 1419 50.81 MGTYRSSPILALLFFLLVTLPSALTSSIIPERTDDEVMALYDQWRAKHGKLHNHLGPESQNRFHIFKDNLKYIDEINAQNLPYRLGLNVFADLTNEEYRSKYLGAKIAAGSRRNKTSSRYQPRLGDEVPDSIDWREKGAVAPIKDQGSCGSCWAFSTIAAVEGINQIVTGDLVALSEQELVDCDISYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYKGYDSTCIQSKKNARVVSIDDYEDVPVNNEKALQKAAAKQVVAVAIEGGGRSFQLYRSGIFTGRCGTDLDHGVNVVGYGSEGGVDYWIVRNSWGASWGESGYIRMQRNVASPKGLCGIAMEPSYPIKTGLNPPNPGPTPPSPVEPPTPVEPPTPVKPPTVCDEYYDCPAAETCCCLFQFSNTCFVWGCCPLESATCCDDLYSCCPHDYPVCDVGAGTCLKSKNDVFGVKAMRRTAAVAKPSWALGGGVSVGKSSA 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 956019 959714 + Cp4.1LG06g01630.1 Cpe06g00176 470956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00176 472 SUPERFAMILY Cysteine proteinases 33 343 IPR038765 -
Cpe06g00176 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Cpe06g00176 472 MobiDBLite consensus disorder prediction 345 370 - -
Cpe06g00176 472 Gene3D Granulin 376 447 IPR037277 -
Cpe06g00176 472 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 373 - -
Cpe06g00176 472 Gene3D Cysteine proteinases 24 345 - -
Cpe06g00176 472 SUPERFAMILY Granulin repeat 375 409 - -
Cpe06g00176 472 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Cpe06g00176 472 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Cpe06g00176 472 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Cpe06g00176 472 CDD Peptidase_C1A 129 342 IPR039417 -
Cpe06g00176 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Cpe06g00176 472 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Cpe06g00176 472 PANTHER CYSTEINE PROTEASE 25 373 - -
Cpe06g00176 472 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Cpe06g00176 472 SMART Inhibitor_I29_2 41 98 IPR013201 -
Cpe06g00176 472 SMART GRAN_2 378 435 IPR000118 -
Cpe06g00176 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Cpe06g00176 472 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Cpe06g00176 472 Pfam Granulin 389 436 IPR000118 -
Cpe06g00176 472 MobiDBLite consensus disorder prediction 344 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00176 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101217590 783.097
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00195 Cpe06g00176 CCT
Cpe02g00195 Cpe06g00176 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01425 Cpe-Chr5:9965092 Cpe06g00176 Cpe-Chr6:956019 1.86E-23 dispersed
Cpe06g00176 Cpe-Chr6:956019 Cpe07g00393 Cpe-Chr7:2540050 6.21E-137 dispersed
Cpe10g00449 Cpe-Chr10:2627482 Cpe06g00176 Cpe-Chr6:956019 1.84E-144 wgd
Cpe15g00476 Cpe-Chr15:5754029 Cpe06g00176 Cpe-Chr6:956019 4.90E-34 wgd
Cpe19g00637 Cpe-Chr19:5160213 Cpe06g00176 Cpe-Chr6:956019 2.41E-146 wgd
Cpe02g00195 Cpe-Chr2:1015211 Cpe06g00176 Cpe-Chr6:956019 0 wgd
Cpe04g00295 Cpe-Chr4:3733287 Cpe06g00176 Cpe-Chr6:956019 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00176 Cpe_Chr06 FPKM 13.89538 15.067001 15.054023 16.019428 22.09774 23.579901 23.788761 16.552275 14.597561 15.338829