Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe06g00180 | ATGAGAAACTACAGAATGGCGAAACGGCATTGCTACCCTCTTTCAATTGCGCATTCAATTTCAGGTCACCAAAACGGTTCACTTTTTCTTGATTCCCTCTACTGCTTGGAGGAGGAGGAAGAAATTGGGGATGGACATTCCCAGCCAAAGATCGAAGCTTTCTCGATAAATGTTAACGTCGATTCCCCGAATTCTGTGTTCTTGTCGGACAGGGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAGAAATAAGCTCCACGATGCTCTCCCACACAATCCCTCTCTAGCTGCGGCTCGCTCCGACGCGGTTGAGTGGATTCTCAAGGTCAATGCCCATTACTCCTTTACTGCTCTCACCGCCGTTTTGGCCGTTGATTATGTCGACAGGTTCCTGTCCAGCTCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTGTTTATCTCTCGCTGCTAAAGTGGAGGAAACCGAGGTTCCCCTGCTTTTAGACCTCCAGGTGGAGGAAAATGGGTACTTTTTCGAAGCTAAAACCATTAAAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCGGTGAACCCACTTTCATTTTTGGACTATATTGTAAGACGGCTCGGCTTCAAGGACCAACTCTGTTCTGAATTCCTCTGTAAATGTGAAAGATTACTTCTTTCTGTCATTTTAGATTCCAGATTCGTATGCTTTCTTCCATCGGTGATAGCAAGCGCCATTATTTTTCAAGTTATCAACGACAAAGAACCCCATGTCGCAGCAAAATACAACGATCAGCTTCTGGGTTTTCTTCAAATCGACAAGAATAAAGTGGAAGATTGCTCACAATTCATCATAGAGGCTTCATCGAGAGGACACACAAACAAACAAAGATTTGGTTTAGTGGACATGTCGTGCAGCTCAAATGGTCGGACTCAGAATGTGGACCGTGTAGTGTCGTCGCCGGAGACAGCAACGAAGAAGAGGAAAATTGATGAACAGCCACCGTAG | 1050 | 45.33 | MRNYRMAKRHCYPLSIAHSISGHQNGSLFLDSLYCLEEEEEIGDGHSQPKIEAFSINVNVDSPNSVFLSDRDFLWEDEELVSLFSKENRNKLHDALPHNPSLAAARSDAVEWILKVNAHYSFTALTAVLAVDYVDRFLSSSHFQIDKPWMTHLTAIACLSLAAKVEETEVPLLLDLQVEENGYFFEAKTIKRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCKCERLLLSVILDSRFVCFLPSVIASAIIFQVINDKEPHVAAKYNDQLLGFLQIDKNKVEDCSQFIIEASSRGHTNKQRFGLVDMSCSSNGRTQNVDRVVSSPETATKKRKIDEQPP | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 976067 | 977800 | + | Cp4.1LG06g01640.1 | Cpe06g00180 | 470960 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe06g00180 | 349 | Gene3D | - | 207 | 296 | - | - | |
| Cpe06g00180 | 349 | PANTHER | CYCLIN D3.1 PROTEIN | 56 | 332 | - | - | |
| Cpe06g00180 | 349 | SMART | cyclin_7 | 111 | 199 | IPR013763 | - | |
| Cpe06g00180 | 349 | PANTHER | CYCLINS | 56 | 332 | IPR039361 | - | |
| Cpe06g00180 | 349 | SUPERFAMILY | Cyclin-like | 209 | 310 | IPR036915 | - | |
| Cpe06g00180 | 349 | Gene3D | - | 104 | 206 | - | - | |
| Cpe06g00180 | 349 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
| Cpe06g00180 | 349 | ProSitePatterns | Cyclins signature. | 106 | 137 | IPR006671 | - | |
| Cpe06g00180 | 349 | SUPERFAMILY | Cyclin-like | 75 | 206 | IPR036915 | - | |
| Cpe06g00180 | 349 | SMART | Cyclin_C_2 | 208 | 326 | IPR004367 | - | |
| Cpe06g00180 | 349 | CDD | CYCLIN | 106 | 198 | IPR013763 | - | |
| Cpe06g00180 | 349 | Pfam | Cyclin, C-terminal domain | 208 | 310 | IPR004367 | - | |
| Cpe06g00180 | 349 | Pfam | Cyclin, N-terminal domain | 97 | 206 | IPR006671 | - | |
| Cpe06g00180 | 349 | MobiDBLite | consensus disorder prediction | 325 | 349 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00199 | Cpe06g00180 | CCT | |
| Cpe06g00180 | Cpe11g00137 | CCT | |
| Cpe02g00199 | Cpe06g00180 | ECH | |
| Cpe06g00180 | Cpe11g00137 | ECH | |
| Cpe06g00180 | Cpe07g00498 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00199 | Cpe-Chr2:1031220 | Cpe06g00180 | Cpe-Chr6:976067 | 1.82E-155 | dispersed | |
| Cpe06g00180 | Cpe-Chr6:976067 | Cpe14g00286 | Cpe-Chr14:1670885 | 3.83E-88 | dispersed | |
| Cpe01g00427 | Cpe-Chr1:2468894 | Cpe06g00180 | Cpe-Chr6:976067 | 9.45E-88 | wgd | |
| Cpe11g00137 | Cpe-Chr11:738016 | Cpe06g00180 | Cpe-Chr6:976067 | 1.58E-113 | wgd | |
| Cpe15g00473 | Cpe-Chr15:5737985 | Cpe06g00180 | Cpe-Chr6:976067 | 2.93E-72 | wgd | |
| Cpe19g00642 | Cpe-Chr19:5181481 | Cpe06g00180 | Cpe-Chr6:976067 | 1.09E-78 | wgd | |
| Cpe04g00298 | Cpe-Chr4:3757790 | Cpe06g00180 | Cpe-Chr6:976067 | 2.06E-69 | wgd | |
| Cpe06g00180 | Cpe-Chr6:976067 | Cpe07g00498 | Cpe-Chr7:3257734 | 1.56E-102 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe06g00180 | K14505 | - | csv:101218302 | 544.273 |