Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00187 ATGTTCATGCCGTCGTCCATGGCGATCACATTCCTATGCCTTCTGATTTTATTGATACTTCACATATTCACAAATCAATTCCTTCACAGAATCCGAAACCTCCCCCCGAGCCCATTTTTTTCACTACCCATCATAGGCCAACTCTACCTCCTCAAACGCCCCCTTCACCGGACCCTATCCGACATCTCGCGCCGGCATGGCCCAATCCTCTTCTTCTGGTTCGGTTTCCGACCAGTCCTGGTCGTCTCTTCTCCGTCAGCCGCCGAGGAGTGTCTCTCCAAAAACGACATCGTATTCGCAAACCGGCCTCATCTCATAGGCGGCAAATACCTCGGGTACAATTACACAAGCCTCCTCTGGGCTCCGTATGGCGAGCACTGGCGAAACCTCCGCCGAGTCTCGTCCTTAGAAATCTTCTCCACCCACCGCCTCCAAACGCTTTCCAGTATTCGCGTCGACGAAGTTCGTACGTTGATCCGGAGGCTGTACAACACCGAAAACGACGTCGTAGACATGAGAACAGAGTTTTTCGAGTTGATGTTCAATATCATGATGAGAATGATCGCTGGAAAGCGGTATTATGGGGAAGACGCGGCGGAGTCGGAGGAAGCAGAGAGATTCCGGGAGATTCAGGAGGAGACGTTTCGGTTGAGCAGCAAGACTAATTTGGGGGACTTCTTAAGGATCGTGAAATGGGCTGGATTATCCAAAGGGCTTGAAAACAGGATGAAGGAGTTGCAGAGCAAGCGGGATGCTTGGATGCAGAGTTTGATCGAGGAACATCGTAAACAGAGTAAAAAGGATGCTAAAAAGACCATGATTGAGGTCCTCCTCTCGCTGCAACAAAAGGAACCTCGCTATTATAAGGACGAGTACATCAGAGGCCTCATGCTCAGGGCTATTTACCGGGTCCTCTCCGCGCCAATTACCGTCGTTTCTCCTCCGTCTGCACCATCGCGTACGGTCCACCAGGACACCATGTCTCCGCCCTCCACCAGTTTACATTCTGCCATCTTCGTCTATTGTTTAGTTGGTTTCAATTTGCTGGGCGCGATTTTTTCCTCATCTGTGGACTCTAGAGACTTCGATTATCAGCAGCGCCCTGTGATTCTTCCTCTCTATATTTCACCGACGAATTCCACCCATCAGCGCGTTTTGGACCGTGATCATCGTCTCCGGCACCTGTTGAACTTGGAAAAACCCCACTCGTCAAATGCTCGAATGAGGCTCTACGACGACCTCCTTACCAACGGGTATTACACGACGCGTCTATGGATTGGGACTCCTCCACAAGAATTTGCTCTTATTGTGGACACCGGAAGTACTGTGACATACGTTCCCTGCTCTAACTGCGTAGATTGCGGGAACCATCAGGATCCAAGGTTCCAACCGAAGTTGTCTAGCTCATATCAACCTGTTAAGTGCAATATCGATTGTAGCTGTGATGACAATGGAGTCCAGTGTACATACGAGAGACGGTACGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGACATCATGTCATTTGGAAAAGAAAGTGAACTTCTACCCCAGCGTGCAGTCTTTGGCTGTGAAACTATGGAAACTGGCGATCTTTATACCCAGCGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTTGTTGGCAAGGGTGCTGTGAGTAATTCATTTTCATTATGTTATGGTGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCCTGGTATGCTTTGGGATGGAAACAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAGCCATTGAAGTTGAATCCGAGGACTTTCGATGGGAAGTATGGATCTGTCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTTAAGGACGCTCTAATGAAGAAAATTAGTTTCCTGAAACAAATCAATGGTCCTGACCCGAATTTTAAAGATATTTGTTTTTCTGGTGCTGGGAGAGTAAAGCTGCGTGGTCTCTTTTCATTGGCAGGAATTATTGTTCGTAATACCCTTGTCACCTATGATCGAGAGAACACCGAAATTGGGTTTTGGAAGACTAACTGTTCTGAACTTTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCTCCAGCTCCTCCTCCAGCTCCTCTACCTTCCTATGGTCAGAATACAAGTAATGAAATTCCTCCACCTGTTTCTCCAACTGTGCCATTTCTTTCCGGTGAATTTCAGGTTGGAGTCATAACATTTAACATGGTGCTTCATGCCAACAAATCCTCCGTGAAACTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAGCTTGAAGTTAATGTCTCACAGGTGCTGAACTTCACATCGGGGGAAACTGATTTCTTCATTAGATGGGCCATCTTCCCTGCTGATTCTGCTGGTTATATATCTAATTCCACGGCAATGGACATAATTTCTCGCCTGAAGGAACATGACTTGCAACTTCCTGAAAAATTCGGAAGCTATCAGCTGGTTGAATTGAATATTGAACCTCCATTAAAGAAGACATGGATGGAGCAGCACTTCTGGTCTATGATGTCTATTGTAGCAGCAGTTACCTTAGTTGTTGGATTGGCAGCCGGAAGCACGTGGCTGATTTGGAGATACAGACGGAGGGAGCTGAGTTCATATGAGCCTGTTGGTGCTGTCGGACCCGAGCAAGAACTTCAGCCACTATAG 2769 47.31 MFMPSSMAITFLCLLILLILHIFTNQFLHRIRNLPPSPFFSLPIIGQLYLLKRPLHRTLSDISRRHGPILFFWFGFRPVLVVSSPSAAEECLSKNDIVFANRPHLIGGKYLGYNYTSLLWAPYGEHWRNLRRVSSLEIFSTHRLQTLSSIRVDEVRTLIRRLYNTENDVVDMRTEFFELMFNIMMRMIAGKRYYGEDAAESEEAERFREIQEETFRLSSKTNLGDFLRIVKWAGLSKGLENRMKELQSKRDAWMQSLIEEHRKQSKKDAKKTMIEVLLSLQQKEPRYYKDEYIRGLMLRAIYRVLSAPITVVSPPSAPSRTVHQDTMSPPSTSLHSAIFVYCLVGFNLLGAIFSSSVDSRDFDYQQRPVILPLYISPTNSTHQRVLDRDHRLRHLLNLEKPHSSNARMRLYDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVDCGNHQDPRFQPKLSSSYQPVKCNIDCSCDDNGVQCTYERRYAEMSTSSGVLAEDIMSFGKESELLPQRAVFGCETMETGDLYTQRADGIMGLGRGTLSVMDQLVGKGAVSNSFSLCYGGMDVGGGAMVLGGISSPPGMLWDGNSPYYNIELKEIHVAGKPLKLNPRTFDGKYGSVLDSGTTYAYFPEKAYYAFKDALMKKISFLKQINGPDPNFKDICFSGAGRVKLRGLFSLAGIIVRNTLVTYDRENTEIGFWKTNCSELWKNLHYLSPAPPPAPPPAPLPSYGQNTSNEIPPPVSPTVPFLSGEFQVGVITFNMVLHANKSSVKLNITELAEFIANELEVNVSQVLNFTSGETDFFIRWAIFPADSAGYISNSTAMDIISRLKEHDLQLPEKFGSYQLVELNIEPPLKKTWMEQHFWSMMSIVAAVTLVVGLAAGSTWLIWRYRRRELSSYEPVGAVGPEQELQPL 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1001260 1009862 + Cp4.1LG06g01910.1 Cpe06g00187 470967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00187 922 SUPERFAMILY Cytochrome P450 35 298 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe06g00187 922 Pfam Xylanase inhibitor N-terminal 420 584 IPR032861 -
Cpe06g00187 922 Gene3D Acid Proteases 397 583 IPR021109 -
Cpe06g00187 922 Gene3D Cytochrome P450 29 302 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe06g00187 922 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 686 756 - -
Cpe06g00187 922 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 357 680 - -
Cpe06g00187 922 CDD pepsin_A_like_plant 419 712 IPR034161 -
Cpe06g00187 922 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 435 446 IPR001969 GO:0004190|GO:0006508
Cpe06g00187 922 Coils Coil 236 256 - -
Cpe06g00187 922 Pfam Xylanase inhibitor C-terminal 600 676 IPR032799 -
Cpe06g00187 922 Pfam Cytochrome P450 36 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe06g00187 922 Gene3D Acid Proteases 590 683 IPR021109 -
Cpe06g00187 922 SUPERFAMILY Acid proteases 416 717 IPR021109 -
Cpe06g00187 922 ProSiteProfiles Peptidase family A1 domain profile. 420 812 IPR033121 -
Cpe06g00187 922 PANTHER ASPARTYL PROTEASES 686 756 IPR001461 GO:0004190|GO:0006508
Cpe06g00187 922 PANTHER ASPARTYL PROTEASES 357 680 IPR001461 GO:0004190|GO:0006508
Cpe06g00187 922 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe06g00187 922 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe06g00187 922 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00187 - - - cmos:111442809 1176.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00207 Cpe-Chr2:1066865 Cpe06g00187 Cpe-Chr6:1001260 5.45E-106 dispersed
Cpe05g01173 Cpe-Chr5:8014365 Cpe06g00187 Cpe-Chr6:1001260 1.17E-167 dispersed
Cpe06g00187 Cpe-Chr6:1001260 Cpe16g00137 Cpe-Chr16:3143214 0 dispersed
Cpe02g00208 Cpe-Chr2:1070227 Cpe06g00187 Cpe-Chr6:1001260 1.37E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g686 . . . . . . . Bma01g02256 . . . Cma09g00271 . . . Cpe06g00187 . Bhi04g00395 . . . . . Lcy13g2119 . . . . . . . . . . . . Csa04g02459 . . . . . . . . . . . . Cmo09g00267 . . . . . . Bhi09g03252 . . . . Mch11g0343 . . . . . . . . . . Chy07g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00187 Cpe_Chr06 FPKM 0.393939 0.092538 0.0 0.391936 0.652781 0.602904 0.702039 0.0 0.0 0.0