Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00193 ATGAGTTGCAGCGGCTGCAGAGTACTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCGTTCGCCGGAAGCCCAGGCCAACGCCACCTTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCGGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCGGTTGGTCTCTTGTCCAGCGGGAACTGGCACGTCTGTCAGCTGGCTGCGGACACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACGTCGATGATTCCACCCTTACTTTCAATACCGATGTCTGGACCACTACCGCACAAAATCTTCAACTCTACCCATCCACTCCGTCGGATTTCCGGTGCCTCCCTGATCTCGCCGTCGCCGCCGGAAGAGCGAAGAATCATACCCTGGAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGCGACCGACGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA 609 55.67 MSCSGCRVLRKGCNEACVLRSSLHWIRSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPTRNVDDSTLTFNTDVWTTTAQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSEDSIMTSFGSGDRRKQRKLLNLFI 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1035430 1036744 - Cp4.1LG06g01970.1 Cpe06g00193 470973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00193 202 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cpe06g00193 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 202 - -
Cpe06g00193 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 202 - -
Cpe06g00193 202 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00212 Cpe06g00193 CCT
Cpe02g00212 Cpe06g00193 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00193 Cpe-Chr6:1035430 Cpe18g00757 Cpe-Chr18:7279054 1.79E-45 dispersed
Cpe19g00663 Cpe-Chr19:5304244 Cpe06g00193 Cpe-Chr6:1035430 7.03E-58 wgd
Cpe02g00212 Cpe-Chr2:1091004 Cpe06g00193 Cpe-Chr6:1035430 2.25E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49637 PF03195 LOB 3.20E-24 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00193 - - csv:101208953 347.821