Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00194 ATGGCTCTTGAAGCTCTGAATTCTCCCACCACGCCATCACCGGCTCTCCACTATGATGATCCTAGCCCCAATTCGATTGAGTCTTGGTCTAAGCGGAAGAGGACCAAGCGTCCACGGGGATTTGATAATCCTCCCACCGAGGAGGAGTATTTAGCGCTATGTCTCATCATGCTGGCTCGCGGTGGCGCAACCCCTACTGCCGACCCTGACCACCGACTTGAGTATGAAGTTCCCATTCCGGCTCAACCCATATCGGTTGTTAAGCTTAGCTACAAGTGCTCTGTTTGCAATAAGGCGTTTTCGTCTTATCAGGCGTTGGGTGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCTACTACTACTACTACCACTACTTCCGCCACCGCCACCGCCTCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCGACTGGCCAGGCCTTGGGCGGCCACAAGCGTTGCCACTACGATGGCGGAATCAACAACAACAACAACAACACCACCACCACCAACAACAACAACGCCACTGTGACATCGTCGGAAGGAGTTGGGTCCACCCACACAAAGAGCCACAGCCACCGCGACTTTGACCTCAACCTCCCTGCTTTGCCAGAATTATCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTGTATTGACGATTCCCAAAATCGAAATTTCTCAAAATTAA 768 52.34 MALEALNSPTTPSPALHYDDPSPNSIESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATPTADPDHRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTTTTSATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGINNNNNNTTTTNNNNATVTSSEGVGSTHTKSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRVLTIPKIEISQN 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1041368 1042135 - Cp4.1LG06g01950.1 Cpe06g00194 470974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00194 255 MobiDBLite consensus disorder prediction 178 200 - -
Cpe06g00194 255 MobiDBLite consensus disorder prediction 121 143 - -
Cpe06g00194 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Cpe06g00194 255 SMART c2h2final6 147 169 IPR013087 -
Cpe06g00194 255 SMART c2h2final6 91 113 IPR013087 -
Cpe06g00194 255 MobiDBLite consensus disorder prediction 113 145 - -
Cpe06g00194 255 MobiDBLite consensus disorder prediction 1 18 - -
Cpe06g00194 255 Gene3D Classic Zinc Finger 89 169 - -
Cpe06g00194 255 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Cpe06g00194 255 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Cpe06g00194 255 SUPERFAMILY beta-beta-alpha zinc fingers 91 169 IPR036236 -
Cpe06g00194 255 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 247 IPR044653 GO:0003700
Cpe06g00194 255 Pfam C2H2-type zinc finger 147 171 - -
Cpe06g00194 255 Pfam C2H2-type zinc finger 91 115 - -
Cpe06g00194 255 MobiDBLite consensus disorder prediction 178 209 - -
Cpe06g00194 255 MobiDBLite consensus disorder prediction 1 44 - -
Cpe06g00194 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Cpe06g00194 255 PANTHER ZINC FINGER PROTEIN ZAT10 1 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00194 Cpe-Chr6:1041368 Cpe05g00395 Cpe-Chr5:2240294 7.44E-22 dispersed
Cpe11g00125 Cpe-Chr11:690222 Cpe06g00194 Cpe-Chr6:1041368 3.44E-49 wgd
Cpe15g00444 Cpe-Chr15:5569416 Cpe06g00194 Cpe-Chr6:1041368 6.06E-30 wgd
Cpe02g00214 Cpe-Chr2:1095931 Cpe06g00194 Cpe-Chr6:1041368 3.18E-149 wgd
Cpe04g00323 Cpe-Chr4:3975794 Cpe06g00194 Cpe-Chr6:1041368 1.17E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49638 PF13912 zf-C2H2_6 1.50E-12 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00194 - - csv:101221218 431.024