Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00195 ATGGATTCTTTTGGAGGTCTCAGCGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCAATGGAGGAGCTTGATTTCACGCCACTTATTCCTCCGCCCACGGCGGAGATGCCCGATTGGTTCTGTCATTTGGATTCTTTCACGCCCAATTTGCCTTCTTGTGGCAATGCTATCGATCAGTTCCCCTGTATTGCTGCTGCTGATCATTATATGCCCATGTCTAATGCTGCCATTGATGAGAACAAGATGGACTCCATTTTCTCAGCCTGTACTGACGTTTTGCTGCAAGAAATCTCTGTTTTTTCGGGTGAAGATAGATATCTAAACATGGATGTTCAAACCCAGATAGGGAATGATCATAATGCTACCAATTCTGCTAAGGCATTCCATCACAAAAGGAAATCCATTGTCGTCGCTGATGATGATCATCATCATCACAACAATCTCAACAACCCTACTAAGAAAATTCGTACTTCAAACAATAAAATTAGGAAAGCTACACAGAATAGCAATAAAAAATTGAGCACTCGGCGGCGCAAATGTGAAGAGGATCAGGAAAATGGAGGGCCTGATATGAACAGCTGCTGCAGCGCTAACTCATCAGAGGATGACAGCGCTTCACAAGATACTAATGGTGGTGGTGCTGTCTTAGAGGGCGAGGCATCGCCGCCAAAAGCCAAAACCAGAGCCACCAGAGGCTCTGCTACTGATCCACAAAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCGAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGATGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCACCAGAAGCTTCCTTCTTTTTTGTGA 960 44.27 MDSFGGLSGEGEWDLCSSILSMEELDFTPLIPPPTAEMPDWFCHLDSFTPNLPSCGNAIDQFPCIAAADHYMPMSNAAIDENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQIGNDHNATNSAKAFHHKRKSIVVADDDHHHHNNLNNPTKKIRTSNNKIRKATQNSNKKLSTRRRKCEEDQENGGPDMNSCCSANSSEDDSASQDTNGGGAVLEGEASPPKAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMYAPIAYNGMDIGLHQKLPSFL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1046524 1047937 + Cp4.1LG06g01870.1 Cpe06g00195 470975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00195 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Cpe06g00195 319 Pfam Helix-loop-helix DNA-binding domain 245 285 IPR011598 GO:0046983
Cpe06g00195 319 Gene3D - 237 301 IPR036638 GO:0046983
Cpe06g00195 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 301 IPR036638 GO:0046983
Cpe06g00195 319 MobiDBLite consensus disorder prediction 191 213 - -
Cpe06g00195 319 MobiDBLite consensus disorder prediction 139 242 - -
Cpe06g00195 319 PANTHER TRANSCRIPTION FACTOR BHLH54 70 317 - -
Cpe06g00195 319 MobiDBLite consensus disorder prediction 153 171 - -
Cpe06g00195 319 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 70 317 - -
Cpe06g00195 319 SMART finulus 241 290 IPR011598 GO:0046983
Cpe06g00195 319 CDD bHLH_AtIND_like 236 298 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00195 Cpe11g00124 CCT
Cpe06g00195 Cpe11g00124 ECH
Cpe06g00195 Cpe07g00514 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00195 Cpe-Chr6:1046524 Cpe14g00269 Cpe-Chr14:1556221 2.75E-52 dispersed
Cpe01g00404 Cpe-Chr1:2341237 Cpe06g00195 Cpe-Chr6:1046524 4.63E-53 wgd
Cpe11g00124 Cpe-Chr11:681069 Cpe06g00195 Cpe-Chr6:1046524 3.63E-70 wgd
Cpe15g00441 Cpe-Chr15:5540508 Cpe06g00195 Cpe-Chr6:1046524 7.86E-18 wgd
Cpe04g00326 Cpe-Chr4:4005182 Cpe06g00195 Cpe-Chr6:1046524 2.40E-52 wgd
Cpe06g00195 Cpe-Chr6:1046524 Cpe07g00514 Cpe-Chr7:3391186 6.32E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49639 PF00010 HLH 9.30E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00195 - - csv:101209196 320.857