Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00204 ATGCCCTCCATCTCTAGATTTGTCTATTTCAATCTTGCTTCCATTCCCAATTTCTATCTCTCTGCCTCTTCCCCCCTTCCTTATCTCTTTCACATTGTCTCTTCTTCTTCTTCATTTCTGAAGCACCGATTTGCAACAGCCATGGCGTTTGCAGGAACCACCCAGAAGTGCATGGCCTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGCTAAGCAATTACAACTCCTTTGAAGGGGTGCTCTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGATAAAAGCTTCGAAGGAACACCAAAGATTGGGAAGCCGGAGAAACCAGCTGATTCTGAGAGACCGACAGCGACCAAGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAATGCCTCGGCTGTAAGAACACAGTGTATCCGACCGAGAAGGTTTCAGTGAATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCCCATGAAGGCCGACTTTACTGCAAGCATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAGGGAAGCCATTAA 681 47.72 MPSISRFVYFNLASIPNFYLSASSPLPYLFHIVSSSSSFLKHRFATAMAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1091380 1094109 + Cp4.1LG06g02100.1 Cpe06g00204 470984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00204 226 PANTHER OS06G0237300 PROTEIN 48 226 IPR045268 GO:0051015
Cpe06g00204 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 182 - -
Cpe06g00204 226 Gene3D Cysteine Rich Protein 151 221 - -
Cpe06g00204 226 Gene3D Cysteine Rich Protein 51 121 - -
Cpe06g00204 226 ProSiteProfiles LIM domain profile. 155 215 IPR001781 -
Cpe06g00204 226 SMART lim_4 56 108 IPR001781 -
Cpe06g00204 226 SMART lim_4 156 208 IPR001781 -
Cpe06g00204 226 ProSitePatterns LIM zinc-binding domain signature. 57 91 IPR001781 -
Cpe06g00204 226 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 48 226 - -
Cpe06g00204 226 CDD LIM1_SF3 53 115 - -
Cpe06g00204 226 ProSiteProfiles LIM domain profile. 55 115 IPR001781 -
Cpe06g00204 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 50 82 - -
Cpe06g00204 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 83 123 - -
Cpe06g00204 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 222 - -
Cpe06g00204 226 Pfam LIM domain 57 111 IPR001781 -
Cpe06g00204 226 Pfam LIM domain 157 211 IPR001781 -
Cpe06g00204 226 CDD LIM2_SF3 157 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00204 K09377 CSRP; cysteine and glycine-rich protein - csv:101222637 380.563
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00224 Cpe06g00204 CCT
Cpe06g00204 Cpe11g00115 CCT
Cpe02g00224 Cpe06g00204 ECH
Cpe06g00204 Cpe11g00115 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00204 Cpe-Chr6:1091380 Cpe13g01077 Cpe-Chr13:8720474 2.95E-74 dispersed
Cpe04g01541 Cpe-Chr4:12078964 Cpe06g00204 Cpe-Chr6:1091380 1.26E-92 transposed
Cpe18g00829 Cpe-Chr18:7681935 Cpe06g00204 Cpe-Chr6:1091380 1.80E-93 transposed
Cpe11g00115 Cpe-Chr11:642741 Cpe06g00204 Cpe-Chr6:1091380 1.22E-15 wgd
Cpe15g00434 Cpe-Chr15:5480174 Cpe06g00204 Cpe-Chr6:1091380 8.24E-17 wgd
Cpe02g00224 Cpe-Chr2:1155344 Cpe06g00204 Cpe-Chr6:1091380 2.27E-15 wgd
Cpe04g00329 Cpe-Chr4:4048868 Cpe06g00204 Cpe-Chr6:1091380 1.85E-16 wgd
Cpe06g00204 Cpe-Chr6:1091380 Cpe07g00520 Cpe-Chr7:3427026 5.55E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g643 . . . . . . . . Cmo05g00138 Cmo12g00541 Cma01g01782 Cma09g00294 Car01g01390 Car12g00545 Sed05g2633 Cpe06g00204 . Bhi04g00436 Tan02g1031 Cmetu01g2030 . Hepe08g1339 . Lcy13g2137 Cla08g01627 Cam08g2131 Cec08g1716 Cco08g1838 Clacu08g1817 . Cre08g1600 . . Cone17ag0889 Cone20ag0235 Lsi04g01478 Csa04g02483 . Cme03g02108 . . . Bda01g01625 . . . . Sed01g2723 Cmo01g01840 Cmo09g00287 Cma12g00601 Cma05g00134 Car05g00115 Car09g00248 Cpe11g00115 Cpe02g00224 Bhi09g03223 Tan01g4685 Cmetu07g1130 . Hepe01g1834 Mch11g0367 . Cla05g02110 Cam05g2262 Cec05g2283 Cco05g2324 Clacu05g2259 Cmu05g2121 Cre05g2245 Lsi08g01532 Csa02g01888 Chy07g00193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49640 PF00412 LIM 3.20E-11 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00204 Cpe_Chr06 FPKM 0.548092 0.0 0.0 0.0 0.0 0.0 0.0 1.135205 0.547904 0.684223