Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00211 ATGCCGATGTACCAGCCGGAGCTGGGTGTGGGTGGTGGAGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGGTGGGTTCATCTGCGAGGGTGGAATGGCGGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTTGAGAACATAGAGGTTCCTTCGGTTTTTATCTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTAACGCTTTGTACAGGACAGACCTATGAACGTTCCAACATCATGAAATGGTTTTCTCTTGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATTACTCCCAATAACACTCTTCACCAACTCATTCACAGCTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCAGAGGATGTGCAGGGGAGGGCTCTCGAGCTCTTAGACACGTTGAAAAAGGTCAAGGGCCAAGCCAGAGTCCGAGCCTTGAAGGAGCTTCGACATGTCGTGGCTTTGAATTCTTCGACCAAGAACACCGTGGAAGACAATGGCGGTCTTGCTTTGATTTCTTCTCTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTAGTGAACTTGGATCTCGATGCCGAGACAAGGAGAAACCTCGTCCAACCCGCCAAGATTTCGTTAATGGTGGACATGTTGAACGAGGGATCCACAGACACCAAAATCAACTGCACCAGATTGATTCAAACGCTTCTCGATGGGGACGATTGTGGAGCGGACACTGTCTCAGGTCTAAGCCTGGTGGTTGGATTGTTAAGATTAATCAAAGAAAAACAACACCCAAATGGCGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCAAAGAACAAGGATTTTTCGTTGGGGGGGATTTTGGGTAA 927 48.65 MPMYQPELGVGGGGQVLDVETAVKDGILGGGGFICEGGMAEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNIMKWFSLGHITCPTTMQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRHVVALNSSTKNTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAETRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIQTLLDGDDCGADTVSGLSLVVGLLRLIKEKQHPNGVLAGLRLLKALCSKEQGFFVGGDFG 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1124965 1129188 + Cp4.1LG06g02090.1 Cpe06g00211 470991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00211 308 Gene3D - 136 301 IPR011989 -
Cpe06g00211 308 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Cpe06g00211 308 SUPERFAMILY ARM repeat 146 295 IPR016024 -
Cpe06g00211 308 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 30 299 - -
Cpe06g00211 308 CDD RING-Ubox_PUB 61 103 IPR045210 -
Cpe06g00211 308 PANTHER WDSAM1 PROTEIN 30 299 IPR045185 GO:0061630
Cpe06g00211 308 SUPERFAMILY RING/U-box 51 127 - -
Cpe06g00211 308 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Cpe06g00211 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 135 IPR013083 -
Cpe06g00211 308 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00230 Cpe06g00211 CCT
Cpe06g00211 Cpe11g00111 CCT
Cpe06g00211 Cpe07g00525 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00211 Cpe-Chr6:1124965 Cpe09g00408 Cpe-Chr9:2564268 4.45E-25 dispersed
Cpe11g00111 Cpe-Chr11:627309 Cpe06g00211 Cpe-Chr6:1124965 6.84E-150 wgd
Cpe02g00230 Cpe-Chr2:1183807 Cpe06g00211 Cpe-Chr6:1124965 0 wgd
Cpe06g00211 Cpe-Chr6:1124965 Cpe07g00525 Cpe-Chr7:3466551 2.35E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00211 - - csv:101223113 499.204