Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00218 ATGACTATGGAAGTTACTTCTGAATCTCAGCAACATTCTCTCTACCACCACCAAAGCCAGCCAACTCCAGCAATAGCTATCTCCAACACCATGTCAGATAGCTTCTCAGCTTCCCAGCACTACAATGGTGATTTTCTGTCTCCCCTGTCTGTAATGCCGCTCAAGTCAGATGGGTCTCTTTGTATCATGGACTCAATCAGCAGATCACAAACTCCAGAAACATTGCCAAACATCTCCCCAAAACTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGGCGGCCACAGCTCTAAGCTTAGACAGCAGATATTGCAATCAAAATCCTGAGGCTAACTCAGAGAGACAACAACGTATTCTTCTTCATTCTCAGCGATACTATTCTGGAATGTTCCATTATCCTGCTGAGGATGTCAACAAGGAGTCTCATATTGCAAGTTATTGCTCTGAAATTCGACAAGATATGGAGCAGCGCATCAATGGCTGCTTTGGAGGAGGGAGGAATTGCCAAGACTTGCAGACACTTAGCTTGTCCATGAGCCCTGGCTCTCAGTCTAGTTGTGTTACTACACCAAGCCAAATTTCTCAATCTGGACAAGCCACCATGGAGACAAAGAAAAGGGCTTTGGCTGATCGAAAGCAGCCGGTCCATCGGAAGTCGATCGACACGTTCGGACAAAGAACTTCACAGTATAGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGGAGACAAGGTTACTCAGATTTTAGACCATTTCCTTGTTGCTTGTCATGTTCCTCCAATGTTTTTGTCTAACTTCAAACCATTTCCTTGTTGCTTGTCATGTTCAACTTCCTTATGGATGCTGTTGAATTCAGTTTATCTCGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACACTTAAACTTCCCATTGAAGAACTATGAACTTCAAATTGAAGAAATGATGAACATGAACCGCCAAGAATATGTCGCGCACCTGAGAAGATGGCAAGCTCGGATTGGAAGAGTCGCGGGGAACAAAGACCTTTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGTGGCATAAACGCCGTGACAAACTTCGACACTTCAAGGTACGACGTAGAAAGGATCATGGCGAGCAGTAGCCTCCTCTCAGGAGAATTTGCAAGACGAAATAGAGATCACAAACCAACCAACGCCATCAAACATGAAGAACCAAAGCAGAACATCTCTCGAACCGACCCCGCGGAGGTATACAACAACAATTTAGATTGGAGGACTGTATTCCACGAGAACCTGCTGCTGGATCCAAGCGCAAGCGTCGAATCCATAGACCAAAAGTCCATGGCCTCGAGCGGCGGATACCTGAATAATCTGATCGGAGTCGTCGTCGAAACCGAAGGTTCAAGCAAGTACAAGGCTCACTTCTCCAATGCTTCATCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACTAGTCCTGACAAGCCAAATGGCTCCTCCTCGGTTCCATTTGGAAGCAATGGAAGAAGTATATGGCTCCCATCACCACCGCAAATGAGGCCTGCTCCTGTCTCTTTGCCTGTTGAGTCAACTGTTGGTTGGAATGATGCCTAA 1731 46.16 MTMEVTSESQQHSLYHHQSQPTPAIAISNTMSDSFSASQHYNGDFLSPLSVMPLKSDGSLCIMDSISRSQTPETLPNISPKLEDFLGGATHGREAATALSLDSRYCNQNPEANSERQQRILLHSQRYYSGMFHYPAEDVNKESHIASYCSEIRQDMEQRINGCFGGGRNCQDLQTLSLSMSPGSQSSCVTTPSQISQSGQATMETKKRALADRKQPVHRKSIDTFGQRTSQYRDIDGLVDMRLICGTIVVRRKVKPGKGDKVTQILDHFLVACHVPPMFLSNFKPFPCCLSCSTSLWMLLNSVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYELQIEEMMNMNRQEYVAHLRRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGINAVTNFDTSRYDVERIMASSSLLSGEFARRNRDHKPTNAIKHEEPKQNISRTDPAEVYNNNLDWRTVFHENLLLDPSASVESIDQKSMASSGGYLNNLIGVVVETEGSSKYKAHFSNASSVVSSLSSSRETSPDKPNGSSSVPFGSNGRSIWLPSPPQMRPAPVSLPVESTVGWNDA 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1159931 1163314 + Cp4.1LG06g02060.1 Cpe06g00218 470998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00218 576 Gene3D AP2/ERF domain 258 337 IPR036955 GO:0003700|GO:0006355
Cpe06g00218 576 Gene3D AP2/ERF domain 351 408 IPR036955 GO:0003700|GO:0006355
Cpe06g00218 576 SUPERFAMILY DNA-binding domain 358 407 IPR016177 GO:0003677
Cpe06g00218 576 MobiDBLite consensus disorder prediction 429 449 - -
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 303 360 - -
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 360 543 - -
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 303 360 - -
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 360 543 - -
Cpe06g00218 576 CDD AP2 360 408 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 168 235 - -
Cpe06g00218 576 ProSiteProfiles AP2/ERF domain profile. 231 335 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 168 235 - -
Cpe06g00218 576 MobiDBLite consensus disorder prediction 429 453 - -
Cpe06g00218 576 SUPERFAMILY DNA-binding domain 302 336 IPR016177 GO:0003677
Cpe06g00218 576 CDD AP2 303 335 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 MobiDBLite consensus disorder prediction 522 576 - -
Cpe06g00218 576 SMART rav1_2 360 412 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 SMART rav1_2 293 341 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 Pfam AP2 domain 351 398 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 ProSiteProfiles AP2/ERF domain profile. 345 406 IPR001471 GO:0003700|GO:0006355
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 131 - -
Cpe06g00218 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 19 131 - -
Cpe06g00218 576 MobiDBLite consensus disorder prediction 522 552 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00238 Cpe06g00218 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00218 Cpe-Chr6:1159931 Cpe10g00499 Cpe-Chr10:2922938 9.49E-34 dispersed
Cpe11g00106 Cpe-Chr11:586597 Cpe06g00218 Cpe-Chr6:1159931 2.98E-134 wgd
Cpe19g00692 Cpe-Chr19:5444619 Cpe06g00218 Cpe-Chr6:1159931 2.36E-32 wgd
Cpe02g00238 Cpe-Chr2:1220356 Cpe06g00218 Cpe-Chr6:1159931 1.12E-61 wgd
Cpe06g00218 Cpe-Chr6:1159931 Cpe07g00532 Cpe-Chr7:3517977 8.58E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49642 PF00847 AP2 2.60E-06 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00218 K09285 - csv:101212143 399.823