Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00219 ATGGGTGATCTCGAAAACGACGAAATGGGTTTTCGAAATTCAAACGAGGGGTTACTCAATTGTTCATCTTCCGACAAAATTCCAGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCAATGGTTTCTTCCCATGGCGAATTTTCAAATTCTTTTCCTGTTGTTTTGGAGAGCCATGGAGGGAGTGGGACGACACAGGGTGTTCATTATCCCACAGATTTGGGGTTTGCCAATGGGAATTATTCCGACATGTTTGGTTCTTTTGGTGTTGCCGGGCAGATTCTTGGTGGGTGTTCTTCCAATTACAGAAATGGAGGAACCACAGAGAAGTTATTACCACCATCAGGCGAAGAAACTGCTGCAGGATCACCAAATGGTAAACTCAGAAAACGAGCCCTTGATTCCACTTTCCCATTTAGCCAGCCAAACAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAGGAAGAGAAGAACGCAGAAATGGAGCAGAAATTAGGTGGTAAGGCAACTGGAAAACAAGCTAAAGAGAAGACCAATGATAGCACAGAAGCTCCCAAGGAGAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAGCGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTTATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGATTTTCCACGCACGAGGCAGCAACGGAACTGTTCTTGGATATGATCCCGGGTTGAGCGCGGTTTCCCCGGTCCCTCCTCACCGAATATTTCAGCTTCAGGGGACGATGTCAAATATGCCAACCAACACCACATTCACACAGTTTCCTCCTTTGCCTCAGGGCGGTTTAAAGCAGAGCGCTAACTTCATGCAAAGGGCGGTTGAAATGTTTTGA 1005 45.97 MGDLENDEMGFRNSNEGLLNCSSSDKIPGTMAMGSFFGSGWDPMVSSHGEFSNSFPVVLESHGGSGTTQGVHYPTDLGFANGNYSDMFGSFGVAGQILGGCSSNYRNGGTTEKLLPPSGEETAAGSPNGKLRKRALDSTFPFSQPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQKLGGKATGKQAKEKTNDSTEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEIFHARGSNGTVLGYDPGLSAVSPVPPHRIFQLQGTMSNMPTNTTFTQFPPLPQGGLKQSANFMQRAVEMF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1165665 1168952 + Cp4.1LG06g02080.1 Cpe06g00219 470999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00219 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Cpe06g00219 334 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 264 323 - -
Cpe06g00219 334 MobiDBLite consensus disorder prediction 109 198 - -
Cpe06g00219 334 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 264 323 IPR024097 GO:0006355
Cpe06g00219 334 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 265 IPR024097 GO:0006355
Cpe06g00219 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 267 IPR036638 GO:0046983
Cpe06g00219 334 Pfam Helix-loop-helix DNA-binding domain 212 260 IPR011598 GO:0046983
Cpe06g00219 334 Gene3D - 206 272 IPR036638 GO:0046983
Cpe06g00219 334 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 32 265 - -
Cpe06g00219 334 SMART finulus 215 265 IPR011598 GO:0046983
Cpe06g00219 334 MobiDBLite consensus disorder prediction 148 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00219 - - - cpep:111797605 630.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00239 Cpe06g00219 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00219 Cpe-Chr6:1165665 Cpe09g00247 Cpe-Chr9:1420189 2.59E-43 dispersed
Cpe02g00239 Cpe-Chr2:1229324 Cpe06g00219 Cpe-Chr6:1165665 2.93E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g606 Blo01g01485 . . . Bpe02g00466 . . Bma01g02229 . . . Cma09g00309 Car01g01375 . . Cpe06g00219 . Bhi04g00460 . . . . . . Cla08g01642 Cam08g2146 Cec08g1734 Cco08g1853 Clacu08g1834 . Cre08g1617 Cone4ag1634 . Cone17ag0902 Cone20ag0245 Lsi04g01455 Csa04g02505 . Cme03g02126 . . . . . . . . Sed11g1869 Cmo01g01823 . . . . Car09g00262 . Cpe02g00239 Bhi09g03191 Tan01g4661 Cmetu07g1171 . Hepe01g1851 Mch11g0386 . . . . . . . . Lsi08g01550 Csa02g01869 Chy07g00212 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003749 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 3 2 1 2 1 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49643 PF00010 HLH 3.20E-06 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00219 Cpe_Chr06 FPKM 74.112259 70.454369 66.212677 67.447655 73.041664 71.146568 76.278152 40.507092 43.041096 40.040924