Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00221 ATGACGATTATCGTTGCCGCCGACAGAAAGTACCGGCGGAGCCCTAGAAAGTCCCTACTCCCTGAAAAATACGACCATCAGGAGCCTCTGGAGGTAGGGTTAGAGGGCGCATCGTTCTCCGGCGCGGTCTTCAACCTCTCGAGCACCATCGTCGGGGCTGGTATCATGGCTCTCCCGGCCGCCGTGAAGCAATTAGGTCTAATTCCGGGCTTAATCATGATCATCCTCGGATCTACATTGACGGAGTTGTCAATTGACTTCATCCTAAAATTCTCTCGGACATCCAAATCCGCTACGTACGCCGGCGCCGTCGGCGACTCTCTCGGAAGCGCCGGACGGACCCTCTTGCAGGTTTGCATCGTGGTCAATAACTTGGGTATGCTCATCGTCTACATGATCATCATCGGCGATGTGTTTTCGGGAACAACCACAAATAACGTCCACCATAAGGGCGTGATGGAAGAATGGTTCGGTCAACATTGGTGGACCAGCCGCATATCCTTGATGCTGTTTACCACGCTTCTAATTTTTGCGCCTCTAATCTCCTTCAAACGCGTCGATTCCTTGAGGTACACATCATCTTTGTCGGTGGGCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTATCCATTGCAAAACTGATGGATGGGAGTATTGGAATGCCGCGACTGATGCCGGAACTTATTGATCAGGCATCCTTTTGGCAACTTTTTACCACTGTTCCAATTCTAGTCACTGCCTATATCTGTCACCATAATGATCTTGGACTTCCATACAGCTCGTTGCTTGATGATGTTGTGAGGGTGAGCTATGGCATCCACCTGATGCTTGTTTTTCCAATTGTTTTCTTCTCCCTTCGCCTCAACGTTGATGGTCTGCTGTTTCCCTGTGCCATACCTATTGCTTTCAATAACCGACGATTCTTCTCAATAACCGTAGCTCTCATGAGCTTCATCTTCGTTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACTGCTGCCATCTCTGTTGGGTTCATATTTCCCGCCGCTCTCGTCCTCAGGGACACTTGTGGAGTTGCATCAAAGAAAGACAGGGTGATAGCATGGTTAATGTTCCTACTAGCTGTTTTGTCAAGTATGGCTGCAATCTCCAGCGATATCTACAGTACTTACGTGGTCGAGAAACGCGCTTGA 1200 49.58 MTIIVAADRKYRRSPRKSLLPEKYDHQEPLEVGLEGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLIMIILGSTLTELSIDFILKFSRTSKSATYAGAVGDSLGSAGRTLLQVCIVVNNLGMLIVYMIIIGDVFSGTTTNNVHHKGVMEEWFGQHWWTSRISLMLFTTLLIFAPLISFKRVDSLRYTSSLSVGLAIVFVAITAGVSIAKLMDGSIGMPRLMPELIDQASFWQLFTTVPILVTAYICHHNDLGLPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPCAIPIAFNNRRFFSITVALMSFIFVGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGVASKKDRVIAWLMFLLAVLSSMAAISSDIYSTYVVEKRA 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1176635 1179950 - Cp4.1LG06g02170.1 Cpe06g00221 471001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00221 399 PANTHER AMINO ACID TRANSPORTER 257 392 - -
Cpe06g00221 399 PANTHER AMINO ACID TRANSPORTER AVT6A 257 392 - -
Cpe06g00221 399 PANTHER AMINO ACID TRANSPORTER AVT6A 12 254 - -
Cpe06g00221 399 Pfam Transmembrane amino acid transporter protein 37 254 IPR013057 -
Cpe06g00221 399 Pfam Transmembrane amino acid transporter protein 258 385 IPR013057 -
Cpe06g00221 399 PANTHER AMINO ACID TRANSPORTER 12 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00221 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00961 Cpe-Chr3:7446575 Cpe06g00221 Cpe-Chr6:1176635 7.10E-147 dispersed
Cpe06g00221 Cpe-Chr6:1176635 Cpe17g00619 Cpe-Chr17:5095772 7.46E-80 dispersed
Cpe06g00221 Cpe-Chr6:1176635 Cpe01g00094 Cpe-Chr1:564003 1.43E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01343 . 56 427 Amino Acid/Auxin Permease AAAP Family AT2G41190 66.3 7.8e-137 484.6
Cpe01g01248 CCT,CST,ECH 375 627 Amino Acid/Auxin Permease AAAP Family AT2G41190 51.3 5.9e-76 282.3
Cpe03g00961 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 67.9 4.0e-172 601.7
Cpe06g00221 . 19 393 Amino Acid/Auxin Permease AAAP Family AT3G30390 50.6 7.6e-115 411.4
Cpe03g00961 . 20 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 67.2 2.1e-165 579.3
Cpe12g00758 CST 51 510 Amino Acid/Auxin Permease AAAP Family AT1G80510 74.2 1.3e-181 633.3
Cpe17g00619 CST 3 468 Amino Acid/Auxin Permease AAAP Family AT1G80510 65.0 2.9e-165 578.9
Cpe01g01248 CCT,CST,ECH 345 622 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.6 1.1e-74 278.1
Cpe01g01248 CCT,CST,ECH 345 622 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.6 2.3e-75 280.4
Cpe13g00789 CCT,ECH 1 439 Amino Acid/Auxin Permease AAAP Family AT2G39130 58.9 1.8e-138 490.0
Cpe01g01248 CCT,CST,ECH 262 622 Amino Acid/Auxin Permease AAAP Family AT2G39130 64.2 7.9e-134 474.6
Cpe01g01003 . 22 433 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.6 1.3e-132 470.3
Cpe01g00094 CCT 6 424 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.3 1.6e-130 463.4
Cpe01g01004 CCT 10 427 Amino Acid/Auxin Permease AAAP Family AT3G56200 57.2 7.4e-128 454.5
Cpe13g00789 CCT,ECH 1 440 Amino Acid/Auxin Permease AAAP Family AT3G54830 55.7 2.9e-129 459.5
Cpe01g01248 CCT,CST,ECH 262 634 Amino Acid/Auxin Permease AAAP Family AT3G54830 59.2 3.1e-123 439.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00221 Cpe_Chr06 FPKM 3.113778 3.989499 6.969826 7.293013 31.980539 33.400196 33.01276 5.687562 6.375028 7.205586