Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00228 ATGGAGGAATATAATAATCATGTAAACGAAAACTCAAATCCGAGAGGGAATTTCTTGTACCCATCGGGAGTTGTTGGGGGGAATTCTTCATCTGGTAATTTCGGAAGGTCATCTAATCCGACGGCTCACATGGGTCTCAATTCCTTTCATCTTCAACAAGGAACCGACTGTTTTCAAACCGACCATTCCCACCCGATTGTCAAGACGGAAGCCAGTTCTTCACACCATCAGCTCCACAAATTTCACCACCCTTTACTCAGAGGAGGAGGAGGAGGACAGCCGCCGCCGCTGACGACATGTCGGCCTGACCAACACGGCTTACTCGATGTGGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTGGAAGCCTACATGGAATGTCAAAAGGTGGGTGCTCCGCCGCAAGTGGTGGAACGCCTGGTGGCGGCTCGGCATGAATTCGAAACACGGCAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGACCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGACGGGTCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCACTTCGGATCTTCAATTCCGACGAGAAGTGTGAGGGTATGGGATCGTCGGAGGAGGAACAAGAAAATAGCGGCGGAGAAACCGAGCTACCGGAGATCGACCCACGTGCCGAAGACAGAGAATTGAAGAACCACCTATTGAGAAAGTACAGTGGCTACTTGAGCAGTCTCAAGCAAGAACTTTCAAAGAAGAAGAAAAAGGGAAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCACTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAGTCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCCTCTGAAGATATGCAGTTCATGGTCATGGATGGGCTTCACCCTCCCAACACTGCTCTCTATATCGACGGTCACTACATGACCGATGCCCATTATCGACTCGGACCGTGA 1122 49.11 MEEYNNHVNENSNPRGNFLYPSGVVGGNSSSGNFGRSSNPTAHMGLNSFHLQQGTDCFQTDHSHPIVKTEASSSHHQLHKFHHPLLRGGGGGQPPPLTTCRPDQHGLLDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARHEFETRQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVESQLSSLCNGPLRIFNSDEKCEGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNTALYIDGHYMTDAHYRLGP 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1210210 1213085 - Cp4.1LG06g02340.1 Cpe06g00228 471008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00228 373 Gene3D - 280 342 - -
Cpe06g00228 373 SUPERFAMILY Homeodomain-like 276 352 IPR009057 -
Cpe06g00228 373 ProSiteProfiles ELK domain profile. 255 275 IPR005539 GO:0003677
Cpe06g00228 373 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677|GO:0006355
Cpe06g00228 373 ProSitePatterns 'Homeobox' domain signature. 313 336 IPR017970 GO:0000981|GO:0006355
Cpe06g00228 373 Pfam KNOX1 domain 112 154 IPR005540 GO:0003677|GO:0005634
Cpe06g00228 373 Pfam ELK domain 255 276 IPR005539 GO:0003677
Cpe06g00228 373 CDD homeodomain 287 339 IPR001356 GO:0003677
Cpe06g00228 373 SMART HOX_1 277 342 IPR001356 GO:0003677
Cpe06g00228 373 MobiDBLite consensus disorder prediction 222 250 - -
Cpe06g00228 373 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 365 - -
Cpe06g00228 373 Pfam KNOX2 domain 167 212 IPR005541 GO:0003677|GO:0005634
Cpe06g00228 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 365 - -
Cpe06g00228 373 SMART ELK_2 255 276 IPR005539 GO:0003677
Cpe06g00228 373 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677
Cpe06g00228 373 SMART KNOX1_2 111 155 IPR005540 GO:0003677|GO:0005634
Cpe06g00228 373 SMART KNOX2_2 162 213 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00228 Cpe11g00100 CCT
Cpe02g00244 Cpe06g00228 CCT
Cpe06g00228 Cpe07g00541 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00228 Cpe-Chr6:1210210 Cpe09g00513 Cpe-Chr9:3419266 4.90E-82 dispersed
Cpe19g00947 Cpe-Chr19:6757566 Cpe06g00228 Cpe-Chr6:1210210 1.14E-89 transposed
Cpe11g00100 Cpe-Chr11:547226 Cpe06g00228 Cpe-Chr6:1210210 8.53E-124 wgd
Cpe02g00244 Cpe-Chr2:1263078 Cpe06g00228 Cpe-Chr6:1210210 0 wgd
Cpe06g00228 Cpe-Chr6:1210210 Cpe07g00541 Cpe-Chr7:3587464 2.51E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49644 PF03791 KNOX2 4.20E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00228 - - csv:101213104 596.66