Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00228 | ATGGAGGAATATAATAATCATGTAAACGAAAACTCAAATCCGAGAGGGAATTTCTTGTACCCATCGGGAGTTGTTGGGGGGAATTCTTCATCTGGTAATTTCGGAAGGTCATCTAATCCGACGGCTCACATGGGTCTCAATTCCTTTCATCTTCAACAAGGAACCGACTGTTTTCAAACCGACCATTCCCACCCGATTGTCAAGACGGAAGCCAGTTCTTCACACCATCAGCTCCACAAATTTCACCACCCTTTACTCAGAGGAGGAGGAGGAGGACAGCCGCCGCCGCTGACGACATGTCGGCCTGACCAACACGGCTTACTCGATGTGGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTGGAAGCCTACATGGAATGTCAAAAGGTGGGTGCTCCGCCGCAAGTGGTGGAACGCCTGGTGGCGGCTCGGCATGAATTCGAAACACGGCAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGACCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGACGGGTCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCACTTCGGATCTTCAATTCCGACGAGAAGTGTGAGGGTATGGGATCGTCGGAGGAGGAACAAGAAAATAGCGGCGGAGAAACCGAGCTACCGGAGATCGACCCACGTGCCGAAGACAGAGAATTGAAGAACCACCTATTGAGAAAGTACAGTGGCTACTTGAGCAGTCTCAAGCAAGAACTTTCAAAGAAGAAGAAAAAGGGAAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCACTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAGTCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCCTCTGAAGATATGCAGTTCATGGTCATGGATGGGCTTCACCCTCCCAACACTGCTCTCTATATCGACGGTCACTACATGACCGATGCCCATTATCGACTCGGACCGTGA | 1122 | 49.11 | MEEYNNHVNENSNPRGNFLYPSGVVGGNSSSGNFGRSSNPTAHMGLNSFHLQQGTDCFQTDHSHPIVKTEASSSHHQLHKFHHPLLRGGGGGQPPPLTTCRPDQHGLLDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARHEFETRQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVESQLSSLCNGPLRIFNSDEKCEGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNTALYIDGHYMTDAHYRLGP | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1210210 | 1213085 | - | Cp4.1LG06g02340.1 | Cpe06g00228 | 471008 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00228 | 373 | Gene3D | - | 280 | 342 | - | - | |
Cpe06g00228 | 373 | SUPERFAMILY | Homeodomain-like | 276 | 352 | IPR009057 | - | |
Cpe06g00228 | 373 | ProSiteProfiles | ELK domain profile. | 255 | 275 | IPR005539 | GO:0003677 | |
Cpe06g00228 | 373 | Pfam | Homeobox KN domain | 295 | 334 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe06g00228 | 373 | ProSitePatterns | 'Homeobox' domain signature. | 313 | 336 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe06g00228 | 373 | Pfam | KNOX1 domain | 112 | 154 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe06g00228 | 373 | Pfam | ELK domain | 255 | 276 | IPR005539 | GO:0003677 | |
Cpe06g00228 | 373 | CDD | homeodomain | 287 | 339 | IPR001356 | GO:0003677 | |
Cpe06g00228 | 373 | SMART | HOX_1 | 277 | 342 | IPR001356 | GO:0003677 | |
Cpe06g00228 | 373 | MobiDBLite | consensus disorder prediction | 222 | 250 | - | - | |
Cpe06g00228 | 373 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 365 | - | - | |
Cpe06g00228 | 373 | Pfam | KNOX2 domain | 167 | 212 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe06g00228 | 373 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 365 | - | - | |
Cpe06g00228 | 373 | SMART | ELK_2 | 255 | 276 | IPR005539 | GO:0003677 | |
Cpe06g00228 | 373 | ProSiteProfiles | 'Homeobox' domain profile. | 275 | 338 | IPR001356 | GO:0003677 | |
Cpe06g00228 | 373 | SMART | KNOX1_2 | 111 | 155 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe06g00228 | 373 | SMART | KNOX2_2 | 162 | 213 | IPR005541 | GO:0003677|GO:0005634 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe06g00228 | Cpe11g00100 | CCT | |
Cpe02g00244 | Cpe06g00228 | CCT | |
Cpe06g00228 | Cpe07g00541 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00228 | Cpe-Chr6:1210210 | Cpe09g00513 | Cpe-Chr9:3419266 | 4.90E-82 | dispersed | |
Cpe19g00947 | Cpe-Chr19:6757566 | Cpe06g00228 | Cpe-Chr6:1210210 | 1.14E-89 | transposed | |
Cpe11g00100 | Cpe-Chr11:547226 | Cpe06g00228 | Cpe-Chr6:1210210 | 8.53E-124 | wgd | |
Cpe02g00244 | Cpe-Chr2:1263078 | Cpe06g00228 | Cpe-Chr6:1210210 | 0 | wgd | |
Cpe06g00228 | Cpe-Chr6:1210210 | Cpe07g00541 | Cpe-Chr7:3587464 | 2.51E-125 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49644 | PF03791 | KNOX2 | 4.20E-25 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00228 | - | - | csv:101213104 | 596.66 |